Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01035135001 Vitis vinifera HOM05D000824 ORTHO05D003555 3.9e-31 137.5 70 100.0
GSVIVG01023662001 Vitis vinifera HOM05D000824 ORTHO05D003555 2.9e-26 121.3 62 98.4
GSVIVG01032319001 Vitis vinifera HOM05D000824 ORTHO05D003555 3.8e-26 120.9 61 98.4
GSVIVG01007849001 Vitis vinifera HOM05D000824 ORTHO05D003555 4.7e-24 114.0 59 96.6
CSS0009813 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 2.0e-19 98.6 59 83.1
CSS0043196 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 2.0e-19 98.6 59 83.1
Hma1.2p1_0060F.1_g033050 Hydrangea macrophylla HOM05D000824 ORTHO05D003555 2.6e-19 98.2 59 84.7
SGA_v2.0_scaffold25G10955 Striga asiatica HOM05D000824 ORTHO05D003555 2.6e-19 98.2 59 81.4
Rhsim08G0145600 Rhododendron simsii HOM05D000824 ORTHO05D003555 3.4e-19 97.8 59 83.1
MSTRG.11337 Avicennia marina HOM05D000824 ORTHO05D003555 4.5e-19 97.4 59 83.1
Dinv22775 Davidia involucrata HOM05D000824 ORTHO05D003555 4.5e-19 97.4 58 84.5
Actinidia04822 Actinidia chinensis HOM05D000824 ORTHO05D003555 7.7e-19 96.7 59 81.4
CiPaw.11G054100 Carya illinoinensis HOM05D000824 ORTHO05D003555 7.7e-19 96.7 58 82.8
Gohir.D03G096700 Gossypium hirsutum HOM05D000824 ORTHO05D003555 7.7e-19 96.7 58 81.0
Lj4g0021262 Lotus japonicus HOM05D000824 ORTHO05D003555 7.7e-19 96.7 58 79.3
Ah.11g047720 Amaranthus hybridus HOM05D000824 ORTHO05D003555 1.0e-18 96.3 58 79.3
BcaB01g05683 Brassica carinata HOM05D000824 ORTHO05D003555 1.0e-18 96.3 58 81.0
Ciclev10019317m.g Citrus clementina HOM05D000824 ORTHO05D003555 1.0e-18 96.3 58 82.8
Oeu044875.1 Olea europaea HOM05D000824 ORTHO05D003555 1.0e-18 96.3 58 81.0
SGA_v2.0_scaffold28G11745 Striga asiatica HOM05D000824 ORTHO05D003555 1.0e-18 96.3 59 76.3
C03p03990 Brassica napus HOM05D000824 ORTHO05D003555 1.3e-18 95.9 58 79.3
vmacro17614 Vaccinium macrocarpon HOM05D000824 ORTHO05D003555 1.7e-18 95.5 59 81.4
A03p03540 Brassica napus HOM05D000824 ORTHO05D003555 2.2e-18 95.1 58 79.3
BolC3t12936H Brassica oleracea HOM05D000824 ORTHO05D003555 2.2e-18 95.1 58 79.3
BraA03t09704Z Brassica rapa HOM05D000824 ORTHO05D003555 2.2e-18 95.1 58 79.3
CAN.G1228.20 Capsicum annuum HOM05D000824 ORTHO05D003555 2.2e-18 95.1 58 82.8
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 2.2e-18 95.1 59 78.0
Phvul.003G184400 Phaseolus vulgaris HOM05D000824 ORTHO05D003555 2.2e-18 95.1 58 81.0
Gorai.003G101500 Gossypium raimondii HOM05D000824 ORTHO05D003555 2.9e-18 94.7 58 81.0
Lj9C471T8 Lonicera japonica HOM05D000824 ORTHO05D003555 2.9e-18 94.7 58 82.8
Atru.chr9.564 Acer truncatum HOM05D000824 ORTHO05D003555 3.8e-18 94.4 58 81.0
Actinidia16130 Actinidia chinensis HOM05D000824 ORTHO05D003555 3.8e-18 94.4 59 81.4
Dinv17419 Davidia involucrata HOM05D000824 ORTHO05D003555 3.8e-18 94.4 58 84.5
TWI81G1098 Tripterygium wilfordii HOM05D000824 ORTHO05D003555 3.8e-18 94.4 59 79.7
Migut.I00367 Erythranthe guttata HOM05D000824 ORTHO05D003555 5.0e-18 94.0 59 74.6
Nitab4.5_0001485g0110 Nicotiana tabacum HOM05D000824 ORTHO05D003555 5.0e-18 94.0 58 81.0
Nitab4.5_0009401g0060 Nicotiana tabacum HOM05D000824 ORTHO05D003555 5.0e-18 94.0 58 81.0
Peaxi162Scf00201g00330 Petunia axillaris HOM05D000824 ORTHO05D003555 5.0e-18 94.0 58 81.0
QL10p019699 Quercus lobata HOM05D000824 ORTHO05D003555 5.0e-18 94.0 58 82.8
VMungo1215G1142 Vigna mungo HOM05D000824 ORTHO05D003555 5.0e-18 94.0 58 77.6
EL10Ac5g11138 Beta vulgaris HOM05D000824 ORTHO05D003555 6.5e-18 93.6 58 75.9
Duzib205G0152 Durio zibethinus HOM05D000824 ORTHO05D003555 6.5e-18 93.6 58 82.8
Lj5A102T96 Lonicera japonica HOM05D000824 ORTHO05D003555 6.5e-18 93.6 59 78.0
MSTRG.22957 Avicennia marina HOM05D000824 ORTHO05D003555 8.5e-18 93.2 64 76.6
Eucgr.B00599 Eucalyptus grandis HOM05D000824 ORTHO05D003555 8.5e-18 93.2 59 78.0
Lalb_Chr13g0302831 Lupinus albus HOM05D000824 ORTHO05D003555 8.5e-18 93.2 58 79.3
Sopen03g034120 Solanum pennellii HOM05D000824 ORTHO05D003555 8.5e-18 93.2 58 81.0
PGSC0003DMG400024634 Solanum tuberosum HOM05D000824 ORTHO05D003555 8.5e-18 93.2 58 81.0
BcaB01g05642 Brassica carinata HOM05D000824 ORTHO05D003555 1.1e-17 92.8 58 77.6
DCAR_023168 Daucus carota HOM05D000824 ORTHO05D003555 1.1e-17 92.8 59 74.6
Manes.06G084200 Manihot esculenta HOM05D000824 ORTHO05D003555 1.1e-17 92.8 58 81.0
Medtr4g109580 Medicago truncatula HOM05D000824 ORTHO05D003555 1.1e-17 92.8 58 77.6
Aqoxy3G03684 Aquilegia oxysepala HOM05D000824 ORTHO05D003555 1.4e-17 92.4 58 79.3
Thhalv10013014m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 1.4e-17 92.4 59 76.3
Sed0022878 Sechium edule HOM05D000824 ORTHO05D003555 1.4e-17 92.4 61 70.5
AL8G37660 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 1.9e-17 92.0 59 76.3
Carub.0006s0691 Capsella rubella HOM05D000824 ORTHO05D003555 1.9e-17 92.0 59 74.6
AUR62008537 Chenopodium quinoa HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 72.4
AUR62021554 Chenopodium quinoa HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 72.4
Cc00_g07660 Coffea canephora HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 75.9
Gohir.A03G070300 Gossypium hirsutum HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 77.6
Nn4g23436 Nelumbo nucifera HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 79.3
PGR083G2843 Punica granatum HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 81.0
Sp2g24310 Schrenkiella parvula HOM05D000824 ORTHO05D003555 1.9e-17 92.0 59 74.6
Solyc03g115050.3 Solanum lycopersicum HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 79.3
TAR371G0671 Trochodendron aralioides HOM05D000824 ORTHO05D003555 1.9e-17 92.0 58 77.6
Thhalv10003822m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 2.5e-17 91.7 59 74.6
Sp6g34920 Schrenkiella parvula HOM05D000824 ORTHO05D003555 2.5e-17 91.7 59 72.9
Hund09917 Selenicereus undatus HOM05D000824 ORTHO05D003555 2.5e-17 91.7 58 77.6
Aa31LG3G18510 Aethionema arabicum HOM05D000824 ORTHO05D003555 3.2e-17 91.3 58 75.9
Sc04g0004360 Simmondsia chinensis HOM05D000824 ORTHO05D003555 3.2e-17 91.3 58 77.6
Ah.02g114080 Amaranthus hybridus HOM05D000824 ORTHO05D003555 4.2e-17 90.9 58 72.4
Cpa.g.sc1086.1 Carica papaya HOM05D000824 ORTHO05D003555 4.2e-17 90.9 59 76.3
Haze_07734 Corylus avellana HOM05D000824 ORTHO05D003555 4.2e-17 90.9 58 77.6
THA.LOC104804633 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 4.2e-17 90.9 58 79.3
Carub.0008s2169 Capsella rubella HOM05D000824 ORTHO05D003555 5.5e-17 90.5 57 77.2
DCAR_011568 Daucus carota HOM05D000824 ORTHO05D003555 5.5e-17 90.5 59 74.6
DCAR_011569 Daucus carota HOM05D000824 ORTHO05D003555 5.5e-17 90.5 59 74.6
TPR.G2021 Trifolium pratense HOM05D000824 ORTHO05D003555 5.5e-17 90.5 58 74.1
arahy.Tifrunner.gnm1.ann1.E3U0AR Arachis hypogaea HOM05D000824 ORTHO05D003555 7.2e-17 90.1 58 72.4
arahy.Tifrunner.gnm1.ann1.J8WCL7 Arachis hypogaea HOM05D000824 ORTHO05D003555 7.2e-17 90.1 58 72.4
BcaC04g23467 Brassica carinata HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 74.6
A09p07190 Brassica napus HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 74.6
C07p44760 Brassica napus HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 72.9
C09p08030 Brassica napus HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 74.6
BolC9t53717H Brassica oleracea HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 74.6
BraA09t36368Z Brassica rapa HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 74.6
CARHR274710 Cardamine hirsuta HOM05D000824 ORTHO05D003555 7.2e-17 90.1 59 72.9
AL6G18370 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 9.4e-17 89.7 59 72.9
BcaNung06900 Brassica carinata HOM05D000824 ORTHO05D003555 9.4e-17 89.7 59 72.9
A03p46710 Brassica napus HOM05D000824 ORTHO05D003555 9.4e-17 89.7 59 72.9
BraA03t13794Z Brassica rapa HOM05D000824 ORTHO05D003555 9.4e-17 89.7 59 72.9
CANSAT80G1236 Cannabis sativa HOM05D000824 ORTHO05D003555 9.4e-17 89.7 58 75.9
CARHR205160 Cardamine hirsuta HOM05D000824 ORTHO05D003555 9.4e-17 89.7 59 72.9
Glyma.05G020600 Glycine max HOM05D000824 ORTHO05D003555 9.4e-17 89.7 58 75.9
Psat4g047800 Pisum sativum HOM05D000824 ORTHO05D003555 9.4e-17 89.7 58 74.1
RcHm_v2.0_Chr7g0183161 Rosa chinensis HOM05D000824 ORTHO05D003555 1.2e-16 89.4 58 77.6
Sabra15G0082600 Salix brachista HOM05D000824 ORTHO05D003555 1.2e-16 89.4 57 80.7
AT5G61000 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 1.6e-16 89.0 59 71.2
BcaC06g33184 Brassica carinata HOM05D000824 ORTHO05D003555 1.6e-16 89.0 59 72.9
COL.COLO4_06851 Corchorus olitorius HOM05D000824 ORTHO05D003555 1.6e-16 89.0 58 77.6
Glyma.17G078700 Glycine max HOM05D000824 ORTHO05D003555 1.6e-16 89.0 57 77.2
Lalb_Chr12g0197221 Lupinus albus HOM05D000824 ORTHO05D003555 1.6e-16 89.0 58 74.1
MD06G1225500 Malus domestica HOM05D000824 ORTHO05D003555 1.6e-16 89.0 58 77.6
Prupe.5G205700 Prunus persica HOM05D000824 ORTHO05D003555 1.6e-16 89.0 58 79.3
BcaB08g37297 Brassica carinata HOM05D000824 ORTHO05D003555 2.1e-16 88.6 58 74.1
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 2.1e-16 88.6 58 74.1
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 2.1e-16 88.6 58 74.1
Sed0027547 Sechium edule HOM05D000824 ORTHO05D003555 2.1e-16 88.6 61 67.2
MD14G1212400 Malus domestica HOM05D000824 ORTHO05D003555 2.7e-16 88.2 59 74.6
Potri.015G057300 Populus trichocarpa HOM05D000824 ORTHO05D003555 2.7e-16 88.2 57 78.9
Hund02583 Selenicereus undatus HOM05D000824 ORTHO05D003555 2.7e-16 88.2 58 74.1
MELO3C017228.2 Cucumis melo HOM05D000824 ORTHO05D003555 3.6e-16 87.8 61 67.2
THA.LOC104819400 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 3.6e-16 87.8 58 75.9
ClCG06G015600 Citrullus lanatus HOM05D000824 ORTHO05D003555 4.7e-16 87.4 61 65.6
CsaV3_1G002970 Cucumis sativus L. HOM05D000824 ORTHO05D003555 4.7e-16 87.4 61 67.2
TAR629G0759 Trochodendron aralioides HOM05D000824 ORTHO05D003555 4.7e-16 87.4 58 74.1
AT5G08020 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 8.0e-16 86.7 59 71.2
Duzib084G0695 Durio zibethinus HOM05D000824 ORTHO05D003555 1.0e-15 86.3 58 74.1
Thecc.03G102500 Theobroma cacao HOM05D000824 ORTHO05D003555 1.0e-15 86.3 58 74.1
Nn3g17458 Nelumbo nucifera HOM05D000824 ORTHO05D003555 1.4e-15 85.9 58 74.1
ATR0177G023 Amborella trichopoda HOM05D000824 ORTHO05D003555 2.3e-15 85.1 59 71.2
ECA247G3309 Erigeron canadensis HOM05D000824 ORTHO05D003555 2.3e-15 85.1 59 71.2
Lsat_1_v5_gn_1_14461 Lactuca sativa HOM05D000824 ORTHO05D003555 3.0e-15 84.7 59 67.8
FAN08G1674 Fragaria x ananassa HOM05D000824 ORTHO05D003555 6.7e-15 83.6 58 70.7
PSO017G4603 Papaver somniferum HOM05D000824 ORTHO05D003555 6.7e-15 83.6 57 73.7
PSO478G2603 Papaver somniferum HOM05D000824 ORTHO05D003555 6.7e-15 83.6 57 73.7
FvH4_5g13771 Fragaria vesca HOM05D000824 ORTHO05D003555 1.5e-14 82.4 58 67.2
FAN18G4284 Fragaria x ananassa HOM05D000824 ORTHO05D003555 1.5e-14 82.4 58 67.2
HanXRQChr16g0517661 Helianthus annuus HOM05D000824 ORTHO05D003555 2.0e-14 82.0 59 69.5
HPP92_014050 Vanilla planifolia HOM05D000824 ORTHO05D003555 2.6e-14 81.6 56 71.4
HanXRQChr02g0044771 Helianthus annuus HOM05D000824 ORTHO05D003555 3.3e-14 81.3 59 67.8
Os03g0214100 Oryza sativa ssp. japonica HOM05D000824 ORTHO05D003555 7.4e-14 80.1 57 66.7
Medtr4g109590 Medicago truncatula HOM05D000824 ORTHO05D003555 1.3e-13 79.3 66 62.1
Eucgr.B00601 Eucalyptus grandis HOM05D000824 ORTHO05D003555 1.7e-13 79.0 48 81.2
GSVIVG01014619001 Vitis vinifera HOM05D000824 ORTHO05D003555 1.7e-13 79.0 43 86.0
Zm00001eb400180 Zea mays HOM05D000824 ORTHO05D003555 1.7e-13 79.0 57 66.7
Zm00001eb008630 Zea mays HOM05D000824 ORTHO05D003555 2.2e-13 78.6 57 66.7
CAN.G227.6 Capsicum annuum HOM05D000824 ORTHO05D003555 1.4e-12 75.9 42 88.1
GSVIVG01037062001 Vitis vinifera HOM05D000824 ORTHO05D003555 2.4e-12 75.1 46 82.6
SEGI_23554 Sequoiadendron giganteum HOM05D000824 ORTHO05D003555 2.0e-11 72.0 58 55.2
AL6G18410 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 1.0e-10 69.7 41 78.0
SHI27090 Sapria himalayana HOM05D000824 ORTHO05D003555 1.1e-09 66.2 41 70.7
Zm00001eb282530 Zea mays HOM05D000824 ORTHO05D003555 7.2e-09 63.5 53 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2389 Anthoceros agrestis HOM05D000824 ORTHO05D003555 9.4e-09 63.2 60 53.3
CSS0018008 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-08 61.6 42 73.8
Mapoly0109s0044 Marchantia polymorpha HOM05D000824 ORTHO05D003555 2.7e-08 61.6 57 49.1
Cc01_g08100 Coffea canephora HOM05D000096 ORTHO05D000045 3.3e-06 54.7 56 42.9
Cc10_g10270 Coffea canephora HOM05D017605 ORTHO05D009014 3.3e-06 54.7 56 44.6
CBR_g23266 Chara braunii HOM05D000824 ORTHO05D003555 5.7e-06 53.9 63 44.4
Pp3c1_20770 Physcomitrium patens HOM05D000824 ORTHO05D003555 7.5e-06 53.5 57 43.9


User provided reference genes

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