Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 0.0e+00 2520.7 1255 100.0
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1614.4 1269 65.6
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1577.8 1300 62.5
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1577.4 1313 63.4
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1568.9 1299 62.4
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1532.7 1269 63.2
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1523.5 1301 61.3
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1521.9 1286 60.8
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1513.8 1299 61.0
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1506.1 1277 61.8
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1505.0 1271 61.9
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1496.9 1301 60.6
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1487.2 1301 60.3
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1481.5 1302 59.5
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1478.4 1303 60.2
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1474.5 1302 59.2
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1472.2 1307 59.0
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1471.4 1289 61.3
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1469.9 1297 59.5
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1468.8 1301 60.4
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1468.4 1297 59.4
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1458.0 1301 59.6
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1457.6 1299 58.4
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1455.3 1261 62.7
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1454.5 1305 58.2
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1451.0 1299 59.4
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1448.7 1301 58.3
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1448.3 1300 58.6
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1440.6 1297 58.6
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1439.1 1278 58.9
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1437.2 1299 57.7
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1432.2 1300 58.0
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1431.8 1299 58.0
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1429.1 1308 58.7
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1428.3 1290 58.8
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1427.9 1300 58.2
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1427.9 1312 58.2
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1427.5 1278 58.8
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1427.2 1299 58.6
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1426.8 1299 57.7
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1424.8 1294 58.3
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1419.1 1292 57.9
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1418.3 1302 58.1
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1413.7 1301 57.5
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1411.7 1304 58.1
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1411.0 1289 57.8
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1410.2 1290 58.1
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1409.8 1310 57.6
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1409.4 1300 57.6
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1394.8 1329 56.5
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1394.4 1297 57.3
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1391.3 1332 56.6
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1390.6 1294 57.6
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1389.4 1270 58.4
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1388.6 1332 56.6
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1386.7 1332 56.5
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1382.1 1298 55.7
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1365.1 1299 56.4
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1364.7 1306 55.6
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1363.6 1294 54.9
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1359.7 1299 56.4
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1359.7 1341 53.9
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1358.2 1296 55.1
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1355.5 1298 56.1
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1345.1 1302 55.1
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1344.7 1299 54.9
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1343.6 1298 56.7
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1342.0 1437 52.5
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1340.1 1294 54.9
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1333.9 1220 58.2
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1332.4 1272 55.4
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1326.2 1289 55.9
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1325.8 1303 53.7
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1311.6 1267 55.7
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1310.8 1307 54.6
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1308.1 1303 53.7
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1306.6 1240 56.4
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1290.4 1299 54.5
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1289.6 1299 54.1
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1283.1 1306 53.2
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1283.1 1299 53.9
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1276.5 1290 54.4
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1269.2 1288 53.4
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1268.8 1385 50.4
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1267.3 1291 54.0
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1259.2 1385 50.2
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1245.0 1319 52.2
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1241.5 1318 51.8
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1231.1 1225 54.5
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1214.5 1279 51.8
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1212.2 1268 52.0
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1203.0 1283 51.1
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1200.3 1281 51.1
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1199.5 1272 51.7
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 0.0e+00 1198.7 1277 52.1
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1196.4 1281 51.0
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1195.6 1283 50.9
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1191.8 1280 50.9
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1191.0 1294 51.4
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1190.3 1274 51.3
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1186.4 1294 50.9
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 1184.9 1294 50.8
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 0.0e+00 1183.7 1277 51.0
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1174.1 1279 51.0
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1170.6 1280 50.7
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 0.0e+00 1165.2 1280 50.8
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1161.0 1271 50.9
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1159.4 1306 49.2
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 0.0e+00 1150.6 1278 50.3
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1148.3 1278 50.3
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 0.0e+00 1147.1 1231 51.2
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 0.0e+00 1144.8 1256 52.3
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1141.3 1267 50.0
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1141.3 1267 50.0
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 0.0e+00 1138.6 1268 50.3
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 0.0e+00 1121.3 1174 52.6
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1118.2 1330 47.9
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 0.0e+00 1102.0 1322 47.3
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 7.0e-304 1047.7 1316 46.2
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 1.6e-287 993.4 1289 45.9
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 6.5e-286 988.0 1284 47.0
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 8.5e-286 987.6 1364 43.5
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 1.6e-263 913.7 1291 44.5
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 7.3e-245 851.7 1151 44.7
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 1.1e-235 821.2 830 56.7
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 1.7e-225 787.3 1246 40.2
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.1e-220 768.5 1378 36.1
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.7e-217 760.8 1398 36.2
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 1.3e-214 751.1 1400 37.1
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.0e-210 737.3 1381 35.4
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 1.1e-208 731.5 1335 36.7
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 3.3e-205 719.9 1343 36.4
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 6.9e-203 712.2 747 51.1
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 3.4e-202 709.9 978 43.0
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 8.8e-198 695.3 511 66.5
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.9e-193 680.2 1384 33.7
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.9e-193 680.2 1384 33.7
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 3.8e-193 679.9 500 70.4
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 7.0e-187 659.1 1191 37.5
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 4.9e-148 530.0 1653 28.7
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.5e-141 508.4 472 59.5
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 5.1e-113 413.7 366 61.7
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 4.5e-109 400.6 428 50.2
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 2.3e-105 388.3 1060 30.8
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 1.3e-92 345.9 296 57.8
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 6.7e-65 253.8 199 59.8
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 4.7e-58 231.1 1396 24.6
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 1.7e-52 212.6 443 34.8
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 5.9e-45 187.6 239 43.1
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 2.6e-32 145.6 177 44.1
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 7.0e-30 137.5 1351 20.5
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 2.7e-29 135.6 1388 21.3
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 1.3e-28 133.3 69 88.4
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 1.2e-26 126.7 119 58.0
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-26 126.7 1292 21.7
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 1.2e-26 126.7 86 72.1
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 4.7e-26 124.8 68 86.8
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-25 123.6 1387 20.9
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.1e-25 122.1 88 67.0
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 5.2e-25 121.3 69 79.7
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.9e-25 120.6 1398 21.3
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 8.9e-25 120.6 79 73.4
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 2.2e-23 115.9 1343 20.5
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.2e-21 110.2 1390 19.1
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 2.1e-21 109.4 145 41.4
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 9.5e-19 100.5 49 87.8
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.4e-14 85.9 121 40.5
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.7e-13 82.4 50 78.0
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 3.9e-12 78.6 137 32.1
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 3.1e-09 68.9 41 73.2
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 6.9e-09 67.8 517 22.1


User provided reference genes

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