Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1607.4 815 100.0
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1211.8 813 75.2
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1211.1 812 74.6
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1208.7 821 74.1
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1206.4 810 74.7
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1204.5 812 74.3
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1203.7 810 74.6
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1200.3 810 74.0
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1198.0 812 74.0
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1182.9 812 74.3
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1182.2 812 73.3
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1180.2 811 73.7
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1178.3 811 73.5
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1177.5 811 72.7
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1176.0 811 73.5
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1172.1 812 73.0
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1168.7 811 73.1
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1167.1 814 72.6
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1162.1 812 71.4
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1159.8 819 71.3
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1157.5 812 72.4
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1155.6 814 72.4
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1153.7 814 72.2
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1145.6 833 69.7
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1133.2 814 71.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1129.8 812 70.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1110.5 810 70.0
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 0.0e+00 1104.7 819 70.5
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 0.0e+00 1103.6 796 69.6
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1102.0 729 76.3
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 0.0e+00 1098.6 814 67.9
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1094.7 814 69.3
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 0.0e+00 1094.0 813 68.0
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1088.6 815 68.6
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 0.0e+00 1086.6 812 69.0
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1086.2 874 66.4
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 0.0e+00 1075.1 812 67.1
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.1e-311 1072.8 816 66.8
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.9e-310 1068.9 819 67.4
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 7.2e-310 1067.0 830 66.7
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.7e-309 1065.1 795 68.4
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.0e-308 1063.1 800 68.1
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.0e-308 1063.1 814 69.3
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.4e-308 1062.8 826 65.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 3.9e-308 1061.2 833 65.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 3.9e-308 1061.2 815 65.6
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 8.8e-308 1060.1 818 66.1
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.1e-307 1059.7 821 65.4
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 1.1e-307 1059.7 822 65.9
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 4.4e-307 1057.7 793 68.2
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 2.2e-306 1055.4 815 66.5
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 3.7e-306 1054.7 815 66.4
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 3.7e-306 1054.7 822 65.6
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 1.4e-305 1052.7 827 65.9
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 1.4e-305 1052.7 793 68.1
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 5.3e-305 1050.8 814 65.7
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 5.3e-305 1050.8 800 67.1
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 9.1e-305 1050.0 823 65.0
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.0e-303 1046.6 735 72.8
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.7e-303 1045.8 784 66.8
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 2.2e-303 1045.4 834 64.4
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 7.2e-302 1040.4 798 67.2
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.1e-301 1038.9 797 67.1
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 6.1e-301 1037.3 817 65.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 6.1e-301 1037.3 784 66.3
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 5.3e-297 1024.2 798 66.7
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 3.5e-296 1021.5 816 63.4
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 2.9e-295 1018.5 814 63.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 3.8e-295 1018.1 820 64.3
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 5.0e-295 1017.7 814 63.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 6.5e-295 1017.3 818 64.5
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 8.5e-295 1016.9 814 62.8
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 4.2e-294 1014.6 819 65.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 7.2e-294 1013.8 814 62.9
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 8.0e-293 1010.4 816 62.5
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.8e-292 1009.2 815 62.9
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 7.5e-291 1003.8 842 61.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.8e-289 999.2 822 63.5
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 6.6e-287 990.7 815 61.8
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.9e-286 989.2 819 63.1
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.8e-279 964.9 858 61.2
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 4.9e-274 948.0 812 60.0
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.7e-272 942.2 813 60.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.8e-268 929.5 734 64.3
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 2.9e-266 922.2 611 76.3
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 1.1e-265 920.2 821 58.7
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.5e-264 915.2 619 75.4
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.5e-264 915.2 619 75.4
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.0e-263 913.7 925 53.4
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.7e-255 886.3 620 73.7
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.4e-251 872.1 592 74.5
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 2.4e-249 865.9 760 59.5
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 6.2e-237 824.7 621 69.1
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.5e-230 803.5 621 66.0
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 3.7e-221 772.3 721 55.8
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.0e-198 696.8 799 49.6
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 8.2e-197 691.4 821 45.2
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.2e-195 687.6 769 48.8
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.2e-187 661.0 724 49.2
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 4.5e-187 659.1 545 63.7
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.3e-175 620.2 402 76.1
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.2e-171 607.8 482 65.8
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.6e-163 580.9 394 76.6
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 6.1e-160 568.9 472 59.3
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.6e-158 563.5 552 54.2
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 5.8e-150 535.8 336 77.1
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.2e-140 503.4 394 65.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.0e-138 498.4 345 70.4
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.9e-137 494.2 342 70.2
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 4.6e-131 473.0 814 36.5
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 2.2e-125 454.1 811 37.6
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 2.0e-118 431.0 783 36.8
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 4.6e-107 393.3 478 51.5
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.1e-99 367.9 460 44.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.9e-97 361.3 280 67.5
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.0e-89 334.7 295 60.3
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 8.5e-85 319.3 379 50.1
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.0e-82 310.8 863 29.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.6e-81 307.8 240 62.5
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.0e-77 293.5 183 73.8
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 7.0e-71 273.1 323 46.7
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.5e-68 265.4 310 48.1
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-65 254.2 194 63.4
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.2e-60 237.7 144 76.4
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 6.3e-56 223.4 234 48.7
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 1.2e-54 219.2 176 66.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.7e-54 218.0 231 58.4
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.1e-51 206.8 158 64.6
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.0e-50 204.5 168 66.1
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.9e-48 198.0 168 64.9
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 1.0e-42 179.5 217 47.5
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.8e-41 172.9 155 58.1
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.4e-40 170.2 225 41.3
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 9.5e-28 129.8 157 49.7
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 7.3e-20 103.6 111 48.6
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 2.9e-16 91.7 810 21.5
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 2.7e-14 85.1 73 58.9
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.6e-11 75.9 72 54.2
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.1e-10 73.2 405 22.0
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.7e-08 65.9 43 69.8
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 7.1e-07 60.5 36 72.2


User provided reference genes

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