Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 0.0e+00 3085.8 1592 100.0
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 0.0e+00 1464.1 1521 57.2
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 0.0e+00 1419.8 1597 52.7
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 0.0e+00 1403.7 1587 52.6
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 0.0e+00 1392.1 1597 51.6
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 0.0e+00 1332.4 1584 50.2
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 0.0e+00 1228.8 1594 47.4
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 0.0e+00 1225.3 1596 47.9
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 0.0e+00 1115.5 1701 42.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 0.0e+00 1111.7 1587 44.4
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 0.0e+00 1104.4 1586 44.3
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 0.0e+00 1091.3 1297 50.3
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 0.0e+00 1087.0 1297 49.9
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 3.3e-311 1072.4 1673 42.0
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 1.1e-306 1057.4 1560 43.8
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 3.6e-305 1052.4 1534 44.9
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 3.4e-303 1045.8 1628 42.3
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.7e-302 1043.5 1653 41.7
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 1.0e-288 997.7 1600 41.2
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 4.0e-288 995.7 1600 41.4
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 4.1e-285 985.7 1584 40.6
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.2e-284 984.2 1592 40.5
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 6.2e-281 971.8 1580 40.9
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 2.3e-280 969.9 1569 41.4
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 8.9e-280 968.0 1586 40.4
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 8.6e-275 951.4 1572 40.3
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 1.1e-269 934.5 1604 39.8
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 2.4e-269 933.3 1590 39.4
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 6.6e-267 925.2 1617 38.9
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 2.1e-265 920.2 1598 40.2
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 6.2e-265 918.7 1602 38.5
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 4.4e-263 912.5 1584 39.3
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 7.6e-263 911.8 1599 39.3
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 1.3e-262 911.0 1575 39.7
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 7.1e-253 878.6 1592 38.8
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 9.3e-253 878.2 1598 39.1
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.1e-250 871.3 1607 39.0
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 1.5e-247 860.9 1656 37.1
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 5.8e-247 859.0 1606 39.3
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 1.1e-245 854.7 1654 36.5
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 8.7e-243 845.1 1605 37.9
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 8.7e-243 845.1 1602 38.0
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 5.3e-240 835.9 1598 37.6
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 2.0e-239 833.9 1640 37.3
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 7.1e-237 825.5 1597 37.3
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.6e-236 824.3 1611 36.6
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 2.1e-236 823.9 1600 37.1
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 6.0e-236 822.4 1593 38.0
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 4.3e-234 816.2 1594 37.6
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.2e-231 808.1 1599 36.8
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 3.8e-230 803.1 1587 36.6
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 1.0e-227 795.0 904 54.5
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 1.3e-227 794.7 1604 36.3
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 6.7e-227 792.3 1615 37.6
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 6.3e-225 785.8 1597 36.6
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 6.3e-225 785.8 1583 37.0
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.0e-222 778.5 1606 36.4
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 6.5e-222 775.8 1605 35.9
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 6.7e-219 765.8 1599 35.8
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.3e-217 761.5 1610 35.8
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 8.2e-217 758.8 1222 40.6
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 7.7e-215 752.3 1595 35.9
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 7.2e-213 745.7 1622 34.4
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 7.2e-213 745.7 1615 34.9
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 7.2e-213 745.7 1601 35.5
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 7.2e-213 745.7 1590 37.2
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 9.1e-208 728.8 715 60.3
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-207 728.4 1589 36.5
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 4.2e-205 719.9 1576 36.4
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.3e-203 714.1 1617 35.0
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.1e-200 705.3 1589 36.2
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.1e-200 703.4 1620 35.9
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.7e-198 698.0 851 49.9
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.6e-196 691.4 1584 35.0
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.7e-195 686.0 1546 34.6
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 1.4e-184 651.7 1608 33.1
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 7.0e-176 622.9 958 41.3
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 3.3e-173 614.0 1596 30.8
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 9.5e-173 612.5 667 52.0
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.6e-172 611.7 1592 30.9
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 4.1e-168 597.0 1595 31.7
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.1e-165 589.0 1178 36.0
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 1.8e-163 581.6 1584 32.0
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.7e-161 573.9 1627 31.5
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.7e-161 573.9 1627 31.5
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 7.0e-160 569.7 1598 31.8
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 8.1e-148 529.6 1618 30.4
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 2.3e-147 528.1 772 45.1
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.5e-146 525.4 1570 29.2
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.0e-146 525.0 1610 29.9
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 1.6e-143 515.4 1484 30.7
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 3.5e-143 514.2 686 46.6
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 6.6e-142 510.0 673 46.7
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 1.5e-141 508.8 1570 29.0
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 5.6e-141 506.9 1592 28.8
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 2.6e-138 498.0 1582 29.7
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 9.3e-136 489.6 1584 28.9
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.3e-134 485.0 1178 34.5
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 3.4e-114 417.9 772 38.1
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 6.3e-108 397.1 833 34.8
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.8e-100 370.9 507 47.7
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 6.3e-100 370.5 749 36.7
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.2e-77 296.6 596 38.1
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 6.8e-70 270.8 510 39.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.3e-65 255.8 602 35.4
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.6e-50 206.5 147 73.5
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.7e-49 203.0 298 41.9
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 3.5e-42 178.7 634 26.2
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 3.0e-41 175.6 277 39.0
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 3.3e-40 172.2 244 43.0
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.3e-36 160.2 186 52.7
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.1e-34 152.9 264 38.6
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 9.5e-32 144.1 230 36.5
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.4e-30 140.2 224 36.2
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.3e-28 133.7 130 52.3
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.4e-27 129.4 229 34.5
Oeu024225.1 Olea europaea HOM05D002251 ORTHO05D006775 5.1e-09 68.6 280 31.8
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 1.5e-08 67.0 144 29.2
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 3.3e-08 65.9 136 33.1
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 7.4e-08 64.7 90 42.2
SalBow1G5008 Salvia bowleyana HOM05D045082 ORTHO05D006775 3.7e-07 62.4 66 53.0
SalBow1G5207 Salvia bowleyana HOM05D045082 ORTHO05D006775 3.7e-07 62.4 66 53.0


User provided reference genes

Program Settings