Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1873.6 932 100.0
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1202.2 930 66.3
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1194.9 953 64.3
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1167.5 951 64.2
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1163.3 963 62.1
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1159.1 955 62.6
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1154.4 951 62.7
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1152.9 942 62.8
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1147.5 942 62.7
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1138.3 948 62.0
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1134.8 928 63.8
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1125.5 965 60.4
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1121.3 950 61.8
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1113.2 956 61.4
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1113.2 950 60.2
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1109.0 959 59.5
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1108.6 950 59.7
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 0.0e+00 1093.2 948 59.8
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 0.0e+00 1091.3 967 58.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1090.1 985 57.8
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1083.2 967 58.3
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1075.5 940 59.6
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 8.2e-310 1067.0 940 59.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 3.5e-308 1061.6 954 59.4
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.2e-305 1053.1 954 58.1
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.4e-304 1049.7 950 58.0
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 4.4e-303 1044.6 956 57.7
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 5.7e-303 1044.3 951 58.5
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 9.7e-303 1043.5 950 58.1
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 9.7e-303 1043.5 959 56.8
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 6.3e-302 1040.8 948 57.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 2.0e-300 1035.8 940 56.9
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-299 1033.5 1014 54.8
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.8e-299 1031.6 951 57.1
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 3.8e-299 1031.6 932 58.4
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 5.0e-299 1031.2 949 56.3
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 5.5e-298 1027.7 954 57.3
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 9.4e-298 1026.9 947 56.5
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 3.0e-296 1021.9 955 56.8
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.1e-293 1013.4 947 55.6
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 5.4e-293 1011.1 951 56.3
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 4.5e-292 1008.1 918 57.5
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.1e-290 1003.4 917 57.6
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 7.2e-290 1000.7 968 55.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.1e-289 997.7 954 55.6
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.0e-288 996.9 941 56.0
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 8.8e-288 993.8 947 56.1
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 7.5e-287 990.7 955 55.3
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 4.9e-286 988.0 928 56.2
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 9.2e-285 983.8 949 54.9
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.3e-283 979.2 938 56.1
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 2.9e-283 978.8 950 54.2
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 5.6e-282 974.5 940 55.6
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 7.3e-282 974.2 941 55.3
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.1e-281 972.6 950 55.3
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 2.8e-281 972.2 960 54.0
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 3.6e-281 971.8 939 55.4
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 6.1e-281 971.1 939 54.3
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.0e-280 970.3 935 55.3
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 6.8e-280 967.6 926 55.8
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 4.4e-279 964.9 943 54.7
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 5.4e-277 958.0 941 54.0
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.2e-276 956.8 912 55.7
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 6.6e-275 951.0 912 56.0
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 2.6e-271 939.1 942 53.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.3e-267 926.8 979 51.4
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 8.1e-265 917.5 806 59.1
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.3e-264 916.0 840 58.2
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.4e-261 906.0 801 60.8
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.2e-260 903.7 902 53.7
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 5.6e-250 868.2 927 50.9
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 2.8e-249 865.9 956 50.8
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 3.8e-246 855.5 773 60.4
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.1e-245 851.3 812 56.5
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 3.5e-244 849.0 946 49.7
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.6e-242 841.6 951 49.6
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 2.9e-238 829.3 965 48.7
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 8.4e-238 827.8 972 48.5
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 3.2e-237 825.9 952 48.7
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.2e-236 823.9 967 47.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.6e-236 823.5 844 52.8
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 8.1e-233 811.2 950 48.9
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.8e-232 810.1 936 48.6
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 7.4e-226 788.1 945 47.3
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 4.0e-224 782.3 977 46.2
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.7e-219 765.0 825 51.5
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.4e-215 752.7 723 54.9
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.1e-213 747.7 944 46.3
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 3.9e-211 739.2 972 44.3
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.9e-210 736.9 978 44.2
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 4.3e-210 735.7 712 55.3
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.8e-209 733.0 964 45.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 6.5e-206 721.8 970 44.5
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.5e-205 719.9 571 65.3
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.6e-204 717.2 971 44.5
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.7e-204 716.5 571 65.0
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 3.0e-203 713.0 828 49.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.1e-202 711.1 975 43.9
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 8.2e-201 704.9 887 46.6
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.6e-199 699.9 638 58.2
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.7e-198 697.2 885 44.7
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 3.0e-187 659.8 843 45.3
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-186 657.9 1040 40.4
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.7e-185 652.9 669 52.3
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-184 650.6 901 44.2
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.5e-181 641.0 763 48.0
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.4e-168 597.8 632 53.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 2.4e-168 597.0 632 53.5
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.0e-163 579.7 655 47.5
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.0e-162 577.4 653 47.6
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 3.7e-161 573.2 813 42.9
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 3.7e-153 546.6 925 38.4
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.1e-148 528.9 568 50.2
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 9.2e-144 515.4 787 41.2
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.1e-143 514.2 465 60.6
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-134 485.0 508 51.0
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 1.3e-134 485.0 1005 34.2
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 9.6e-133 478.8 842 36.2
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.8e-132 477.2 720 41.1
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 3.6e-132 476.9 954 33.1
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 8.4e-129 465.7 716 40.4
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.5e-125 454.9 356 66.3
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 4.5e-122 443.4 821 37.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.2e-103 382.1 588 40.6
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 2.1e-103 381.3 594 40.7
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.6e-100 371.7 262 70.2
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 3.1e-99 367.5 259 69.5
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 5.3e-91 340.1 534 42.3
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 4.4e-85 320.5 563 37.7
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-78 298.9 413 45.3
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 8.8e-70 269.6 347 45.0
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.3e-68 265.8 353 44.5
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.7e-68 265.4 211 60.7
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.1e-67 260.8 262 50.4
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 7.2e-64 250.0 1160 24.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-53 216.1 268 44.0
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 4.4e-53 214.2 143 69.9
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 2.2e-52 211.8 202 52.5
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 6.8e-46 190.3 230 46.5
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.9e-44 184.9 299 38.5
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-43 183.0 146 64.4
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 8.6e-41 173.3 187 49.2
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 8.0e-39 166.8 210 46.2
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 1.7e-36 159.1 150 58.7
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 5.2e-30 137.5 142 53.5
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 9.9e-29 133.3 121 53.7
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.1e-27 127.1 127 53.5
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-25 123.2 394 28.9
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 3.9e-25 121.3 216 36.1
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 3.1e-22 111.7 84 64.3
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.1e-22 111.7 81 67.9
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-19 102.8 131 42.7
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 3.2e-19 101.7 155 39.4
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 3.5e-18 98.2 295 27.5
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 6.0e-18 97.4 155 38.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.3e-17 96.3 73 68.5
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 3.3e-16 91.7 105 47.6
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 9.9e-13 80.1 104 40.4
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 1.7e-12 79.3 71 54.9
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 2.2e-12 79.0 142 35.2
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 3.8e-12 78.2 226 30.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 3.8e-12 78.2 117 39.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-11 75.9 89 46.1
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 4.2e-11 74.7 89 46.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 4.2e-11 74.7 89 46.1
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 5.4e-11 74.3 89 44.9
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 4.6e-10 71.2 102 40.2
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 2.3e-09 68.9 81 48.1
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 9.6e-08 63.5 102 37.3
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 4.8e-07 61.2 81 42.0
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 4.8e-07 61.2 81 42.0
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 6.2e-07 60.8 106 37.7


User provided reference genes

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