Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 8.0e-310 1066.2 531 100.0
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.3e-238 829.7 540 78.7
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.1e-194 683.7 532 62.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 9.5e-186 654.1 531 59.1
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.0e-179 631.7 533 59.3
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.6e-178 628.2 533 58.0
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.6e-178 628.2 534 57.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 5.6e-178 628.2 533 59.3
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.0e-176 624.0 536 56.7
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.8e-176 623.2 530 57.5
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.1e-173 614.0 539 55.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 7.0e-173 611.3 529 56.3
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 6.0e-172 608.2 540 56.1
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.3e-171 607.1 530 55.5
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 8.6e-171 604.4 539 54.9
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 3.3e-170 602.4 545 56.7
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 5.6e-170 601.7 530 55.5
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 6.2e-169 598.2 526 55.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 6.2e-169 598.2 530 55.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 6.2e-169 598.2 532 57.7
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.5e-167 593.6 527 55.6
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 4.4e-167 592.0 535 54.8
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 9.8e-167 590.9 527 55.6
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.2e-166 589.7 539 54.5
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 4.9e-166 588.6 534 56.0
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 6.4e-166 588.2 532 54.9
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.1e-165 587.4 537 55.7
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.9e-165 586.6 530 55.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 4.1e-165 585.5 528 54.4
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.2e-164 583.9 526 54.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.7e-164 582.8 531 54.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 9.5e-162 574.3 536 54.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.8e-160 570.1 540 54.3
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.2e-160 568.5 528 53.4
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.2e-158 563.1 532 55.5
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 6.4e-158 561.6 534 52.1
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.6e-156 555.4 538 53.2
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 3.0e-155 552.7 543 52.5
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 5.6e-154 548.5 534 52.8
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 9.6e-154 547.7 532 53.2
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 8.1e-153 544.7 529 51.8
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.4e-152 543.9 538 51.3
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.8e-152 543.5 534 52.6
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.4e-152 543.1 539 51.0
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 5.2e-152 542.0 534 52.8
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 3.4e-151 539.3 530 52.1
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 4.4e-151 538.9 527 52.9
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.8e-151 538.5 527 52.8
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.9e-149 533.5 536 49.3
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.9e-149 533.5 539 49.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 7.1e-149 531.6 540 51.9
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.5e-148 529.3 529 49.3
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 4.6e-148 528.9 539 48.4
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 3.9e-147 525.8 527 49.9
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 4.3e-146 522.3 534 51.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.3e-146 522.3 542 48.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 7.3e-146 521.5 523 51.1
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 9.6e-146 521.2 529 51.2
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.6e-145 519.2 530 50.4
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 2.4e-144 516.5 532 53.8
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.4e-144 516.5 530 50.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.3e-144 515.4 527 50.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 5.8e-143 511.9 552 47.6
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.8e-143 511.9 542 47.4
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.9e-141 506.9 537 48.6
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-140 503.4 522 49.6
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.7e-140 503.1 557 46.5
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.5e-140 502.7 522 49.4
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 4.6e-140 502.3 451 56.5
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.0e-139 501.1 533 47.5
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.0e-139 499.6 537 48.8
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 9.6e-138 494.6 525 48.2
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.8e-137 493.0 531 47.5
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 3.6e-137 492.7 525 48.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.3e-131 474.2 524 47.7
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.5e-130 470.7 543 47.3
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 3.3e-130 469.5 447 55.9
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 5.6e-130 468.8 521 47.8
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.4e-128 464.2 551 47.2
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.8e-128 463.8 587 44.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.8e-128 463.8 547 46.6
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.0e-128 462.6 528 46.4
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 2.6e-127 459.9 533 45.6
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.3e-126 457.6 534 46.6
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 8.4e-126 454.9 528 45.1
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.1e-125 454.5 550 45.3
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.1e-125 454.5 418 57.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 2.1e-124 450.3 533 45.2
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 9.6e-122 441.4 532 44.7
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.1e-120 438.0 540 45.2
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.2e-118 430.3 525 43.6
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.9e-118 429.9 531 44.8
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 7.2e-117 425.2 531 43.9
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 7.4e-114 415.2 511 44.8
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-112 411.4 523 43.6
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-112 411.4 523 43.6
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.1e-112 411.4 523 43.6
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 4.1e-112 409.5 526 43.7
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 3.4e-111 406.4 525 43.4
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 3.0e-107 393.3 467 42.8
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 5.1e-107 392.5 524 41.2
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.3e-98 363.2 325 55.4
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.3e-97 359.0 482 42.9
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 8.5e-94 348.6 544 37.9
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.5e-93 347.1 577 37.4
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.4e-91 341.3 509 39.5
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 3.3e-90 336.7 299 53.5
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.3e-89 334.7 617 34.8
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 1.4e-80 304.7 536 35.6
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 8.0e-76 288.9 282 49.6
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.0e-75 286.6 228 57.9
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.4e-72 278.1 414 41.3
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.2e-72 275.4 302 47.4
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.5e-69 267.3 321 45.5
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.6e-68 264.6 571 34.3
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 4.6e-63 246.5 558 32.1
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 6.0e-55 219.5 553 28.2
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 3.9e-46 190.3 548 28.5
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-45 188.7 413 31.2
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 7.3e-45 186.0 197 45.2
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 5.4e-40 169.9 337 31.5
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.7e-39 167.5 292 36.6
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 9.3e-32 142.5 183 41.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-27 129.0 105 58.1
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 5.8e-26 123.2 125 52.8
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.9e-25 120.2 223 36.8
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 7.1e-24 116.3 108 51.9
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 7.1e-24 116.3 204 37.3
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 4.6e-23 113.6 123 45.5
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 5.6e-21 106.7 283 30.7
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.0e-18 98.2 91 46.2
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.8e-18 96.7 182 35.2
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.6e-18 96.3 182 35.2
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-15 89.0 290 26.6
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-14 85.5 89 44.9
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.8e-12 77.0 69 55.1
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.8e-11 75.1 62 46.8
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.0e-11 73.9 114 36.8
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 9.0e-11 72.8 155 33.5
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.7e-09 68.6 184 22.8
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 6.5e-09 66.6 274 21.9
PGR083G2767 Punica granatum HOM05D001573 ORTHO05D001660 1.4e-08 65.5 314 22.9
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 9.3e-08 62.8 88 35.2
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.3e-08 62.8 159 32.1
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-07 62.0 59 44.1
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.1e-07 61.6 64 46.9
Cc06_g17760 Coffea canephora HOM05D001573 ORTHO05D001660 2.3e-06 58.2 301 21.6
Nitab4.5_0001189g0060 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.3e-06 58.2 43 53.5
Solyc10g079360.3 Solanum lycopersicum HOM05D001573 ORTHO05D001660 2.3e-06 58.2 296 22.3
PGSC0003DMG401008136 Solanum tuberosum HOM05D001573 ORTHO05D001660 2.3e-06 58.2 296 22.3
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 8.7e-06 56.2 298 22.5


User provided reference genes

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