Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.0e-41 171.4 86 100.0
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 3.9e-33 144.4 76 94.7
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 5.2e-33 144.1 78 91.0
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 5.2e-33 144.1 78 89.7
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 6.7e-33 143.7 79 92.4
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 8.8e-33 143.3 78 89.7
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 8.8e-33 143.3 75 94.7
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.1e-32 142.9 72 98.6
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.1e-32 142.9 72 98.6
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 2.0e-32 142.1 75 92.0
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 2.0e-32 142.1 75 92.0
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 2.0e-32 142.1 75 92.0
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 3.3e-32 141.4 74 94.6
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 3.3e-32 141.4 72 97.2
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 3.3e-32 141.4 72 97.2
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 7.4e-32 140.2 77 88.3
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 7.4e-32 140.2 72 95.8
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.7e-31 139.0 72 94.4
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.7e-31 139.0 72 95.8
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 1.7e-31 139.0 73 94.5
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.7e-31 139.0 72 94.4
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.7e-31 139.0 72 94.4
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.7e-31 137.9 74 93.2
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 3.7e-31 137.9 76 90.8
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 4.8e-31 137.5 72 94.4
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 4.8e-31 137.5 75 89.3
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 6.3e-31 137.1 72 93.1
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 1.1e-30 136.3 72 93.1
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 1.1e-30 136.3 75 88.0
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.4e-30 136.0 72 93.1
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 2.4e-30 135.2 72 94.4
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 3.1e-30 134.8 72 91.7
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 3.1e-30 134.8 79 82.3
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 3.1e-30 134.8 76 85.5
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 4.1e-30 134.4 72 90.3
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 4.1e-30 134.4 72 93.1
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.1e-30 134.4 72 93.1
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 5.3e-30 134.0 75 86.7
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 5.3e-30 134.0 76 85.5
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 5.3e-30 134.0 72 91.7
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 7.0e-30 133.7 72 94.4
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 7.0e-30 133.7 73 91.8
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 7.0e-30 133.7 113 66.4
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 9.1e-30 133.3 72 90.3
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 9.1e-30 133.3 72 90.3
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 9.1e-30 133.3 74 87.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 9.1e-30 133.3 72 90.3
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 1.2e-29 132.9 72 90.3
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.2e-29 132.9 72 90.3
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.2e-29 132.9 73 89.0
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.6e-29 132.5 72 87.5
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.6e-29 132.5 76 85.5
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.0e-29 132.1 78 83.3
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 2.0e-29 132.1 72 90.3
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 2.0e-29 132.1 72 90.3
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 2.0e-29 132.1 75 86.7
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 2.0e-29 132.1 75 86.7
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.6e-29 131.7 78 83.3
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 2.6e-29 131.7 82 84.1
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 3.5e-29 131.3 79 81.0
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.5e-29 131.0 73 90.4
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 4.5e-29 131.0 72 87.5
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 5.9e-29 130.6 72 87.5
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 5.9e-29 130.6 78 80.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 5.9e-29 130.6 81 80.2
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 7.7e-29 130.2 80 81.2
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 7.7e-29 130.2 76 86.8
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 7.7e-29 130.2 72 88.9
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.0e-28 129.8 73 89.0
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.0e-28 129.8 73 87.7
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 2.2e-28 128.6 72 84.7
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 2.9e-28 128.3 72 87.5
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 2.9e-28 128.3 72 86.1
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 3.8e-28 127.9 76 81.6
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 5.0e-28 127.5 76 81.6
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 5.0e-28 127.5 76 81.6
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 6.5e-28 127.1 72 86.1
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 6.5e-28 127.1 72 86.1
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.5e-27 125.9 74 81.1
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.5e-27 125.9 76 80.3
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.5e-27 125.9 72 86.1
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.9e-27 125.6 73 87.7
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 1.9e-27 125.6 73 87.7
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 3.2e-27 124.8 72 84.7
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 5.5e-27 124.0 72 84.7
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 9.4e-27 123.2 68 88.2
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 3.6e-26 121.3 70 81.4
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.0e-25 119.8 68 85.3
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 1.4e-25 119.4 72 80.6
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 4.0e-25 117.9 70 81.4
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 4.0e-25 117.9 72 77.8
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.2e-24 116.3 72 73.6
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 2.2e-23 112.1 72 72.2
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 2.8e-23 111.7 72 72.2
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.8e-22 109.0 72 75.0
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.2e-21 106.3 118 52.5
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.0e-21 105.5 56 91.1
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 2.7e-21 105.1 72 72.2
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.6e-18 95.9 49 89.8
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 2.7e-13 78.6 42 88.1
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 7.7e-13 77.0 48 77.1
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 9.5e-11 70.1 69 56.5
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.6e-08 62.0 30 96.7
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 2.8e-07 58.5 47 63.8


User provided reference genes

Program Settings