Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 6.9e-220 766.9 368 100.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 5.6e-169 597.8 337 83.1
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.2e-168 596.7 337 83.1
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.6e-166 589.0 336 83.3
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.7e-165 585.1 330 83.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.7e-163 578.9 336 82.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.0e-162 575.5 343 79.6
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.1e-162 574.7 337 81.6
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 8.6e-162 573.9 336 82.1
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.1e-161 573.5 336 81.2
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 8.1e-160 567.4 334 82.0
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.0e-158 562.8 332 79.8
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 4.4e-158 561.6 336 78.9
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 4.9e-157 558.1 377 71.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 5.4e-156 554.7 330 77.0
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.1e-155 552.7 331 79.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.3e-154 549.3 333 75.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.6e-154 547.7 320 79.7
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 8.7e-154 547.4 330 75.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 8.7e-154 547.4 340 75.3
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 1.5e-153 546.6 308 81.8
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.9e-153 546.2 333 77.8
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 3.3e-153 545.4 333 76.6
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.3e-153 545.0 334 76.3
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 9.6e-153 543.9 306 83.3
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 9.6e-153 543.9 330 78.2
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.6e-152 543.1 330 77.9
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 6.2e-152 541.2 331 77.3
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 6.2e-152 541.2 330 77.9
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.1e-151 540.4 333 76.3
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-151 540.0 330 77.3
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.4e-151 540.0 333 75.1
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.8e-151 539.7 337 76.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 4.0e-151 538.5 332 75.6
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.5e-150 536.6 334 73.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.4e-150 535.4 323 80.2
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 5.8e-150 534.6 331 77.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.8e-150 534.6 338 75.1
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 9.9e-150 533.9 306 82.0
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.3e-149 533.5 367 68.9
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.3e-149 533.5 333 76.6
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.2e-149 532.7 333 75.4
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.9e-149 532.3 333 75.1
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.9e-149 531.6 330 75.2
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 6.4e-149 531.2 333 75.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.4e-148 530.0 337 74.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 1.9e-148 529.6 338 74.0
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.9e-148 529.6 338 74.9
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-148 529.6 338 71.9
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.4e-148 529.3 333 74.8
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 3.2e-148 528.9 333 75.4
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 7.1e-148 527.7 328 75.6
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 9.3e-148 527.3 337 73.6
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.7e-147 525.8 339 73.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.7e-147 525.8 339 73.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.7e-147 525.8 333 74.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 3.5e-147 525.4 338 73.7
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.6e-147 525.0 339 73.7
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 6.0e-147 524.6 339 73.7
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 6.0e-147 524.6 339 73.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.8e-147 524.2 333 74.5
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.7e-146 523.1 338 74.0
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.7e-146 523.1 340 75.3
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.9e-146 521.9 330 75.2
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.9e-146 521.9 332 76.8
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 6.6e-146 521.2 337 76.0
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.6e-146 521.2 341 74.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 6.6e-146 521.2 336 73.5
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.1e-145 520.4 338 72.8
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.3e-145 518.8 338 72.8
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 3.3e-145 518.8 342 74.3
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 5.6e-145 518.1 334 73.1
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 9.6e-145 517.3 339 73.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.3e-144 516.9 317 74.1
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.3e-144 516.9 345 71.0
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.1e-144 516.2 349 72.2
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.1e-144 516.2 340 74.7
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.8e-144 515.8 329 74.8
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.1e-143 513.8 332 73.8
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.4e-143 513.5 325 74.2
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.8e-143 513.1 325 74.2
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.4e-143 512.7 320 74.1
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.1e-143 512.3 348 70.1
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 4.0e-143 511.9 343 72.0
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 9.0e-143 510.8 306 76.5
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 2.6e-142 509.2 328 72.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.6e-142 509.2 325 73.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 3.4e-142 508.8 325 73.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.9e-142 507.3 318 75.2
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.1e-140 503.8 333 72.1
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.4e-140 503.4 337 73.6
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-140 503.4 330 72.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.2e-140 502.3 333 72.1
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.6e-139 500.0 350 71.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 7.9e-139 497.7 324 70.4
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.8e-138 496.5 306 75.5
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 9.6e-137 490.7 295 78.6
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.7e-136 488.8 320 74.1
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.4e-135 486.9 327 72.2
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.4e-135 486.1 307 72.3
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.6e-134 482.6 323 72.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 3.4e-134 482.3 327 71.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 4.5e-134 481.9 318 69.5
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 4.9e-133 478.4 299 75.3
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 7.9e-131 471.1 262 84.0
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.3e-130 470.3 310 73.5
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.9e-130 468.8 336 67.0
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 9.6e-129 464.2 282 75.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.6e-128 463.4 291 75.3
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.1e-128 463.0 329 67.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 4.8e-128 461.8 341 66.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.8e-127 459.9 354 64.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 2.4e-127 459.5 329 65.3
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.0e-127 457.6 312 70.2
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.0e-125 454.1 303 67.0
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 2.2e-125 453.0 312 67.6
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 7.9e-123 444.5 263 79.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.3e-122 443.7 305 65.2
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.9e-121 439.9 402 56.7
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.1e-119 434.1 310 64.8
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.5e-118 430.3 286 71.3
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-117 427.2 331 63.1
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.0e-114 416.0 308 63.6
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 9.7e-113 411.0 242 79.8
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.7e-112 409.1 311 61.4
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.7e-110 401.4 265 70.9
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.3e-104 384.0 248 72.2
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 8.2e-96 354.8 226 69.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.4e-95 354.0 220 75.0
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 5.0e-93 345.5 317 59.0
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.5e-84 316.6 305 52.8
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.7e-83 313.2 238 61.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.8e-82 310.5 301 50.8
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.2e-78 297.7 268 57.1
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 9.8e-73 278.1 171 76.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.7e-72 276.2 185 71.9
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 6.6e-69 265.4 166 74.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 6.4e-56 222.2 138 73.2
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.3e-53 214.5 129 74.4
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 9.5e-52 208.4 114 86.0
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.4e-34 150.6 92 78.3
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.5e-33 147.9 171 49.7
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-27 127.5 75 69.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.3e-24 118.2 64 82.8
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.4e-23 114.0 66 78.8
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 7.1e-23 112.5 169 40.8
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.7e-22 110.5 75 73.3
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.0e-21 108.6 82 64.6
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 6.9e-18 95.9 76 60.5
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.4e-15 88.2 55 76.4
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.3e-11 75.1 78 50.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.1e-11 74.3 214 26.6
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.2e-11 72.8 41 73.2
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 3.4e-09 67.0 230 25.2
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 4.5e-09 66.6 211 27.0
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.7e-08 64.7 95 34.7
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 4.9e-08 63.2 193 27.5
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 3.2e-07 60.5 213 25.4
CBR_g41172 Chara braunii HOM05D015906 ORTHO05D028597 4.2e-07 60.1 223 27.8


User provided reference genes

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