Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 0.0e+00 1504.2 756 100.0
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 3.7e-284 981.5 704 70.7
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 2.1e-279 965.7 743 68.6
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 4.2e-272 941.4 731 67.3
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 9.4e-272 940.3 731 67.2
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 7.5e-269 930.6 763 64.4
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 7.5e-269 930.6 732 66.9
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 3.8e-265 918.3 767 63.2
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.2e-261 906.7 702 66.8
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 9.8e-261 903.7 801 61.5
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 2.2e-260 902.5 763 62.4
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 3.3e-256 888.6 761 62.4
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 4.7e-255 884.8 727 63.1
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 6.3e-252 874.4 761 61.8
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 3.9e-249 865.1 887 54.8
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 7.3e-248 860.9 791 59.4
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.2e-247 860.1 767 60.1
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 3.1e-246 855.5 718 63.1
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 2.7e-242 842.4 734 59.1
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 3.0e-241 839.0 721 59.4
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 7.3e-240 834.3 707 62.0
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.2e-239 833.6 762 60.0
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 3.1e-238 828.9 732 58.3
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 5.2e-238 828.2 760 56.7
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.2e-237 827.0 675 63.4
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.3e-236 823.5 765 59.0
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 8.3e-236 820.8 698 61.5
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.1e-235 820.5 698 61.5
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 9.2e-235 817.4 690 60.9
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 9.2e-235 817.4 711 61.2
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 7.8e-234 814.3 698 61.3
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 3.0e-233 812.4 698 61.2
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 3.9e-233 812.0 717 58.6
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 1.2e-231 807.0 713 59.0
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 8.1e-231 804.3 733 57.7
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 7.5e-229 797.7 663 62.0
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 9.9e-229 797.3 769 56.2
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.9e-227 793.1 720 59.4
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 5.4e-227 791.6 709 59.1
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 1.6e-226 790.0 695 59.6
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 2.7e-226 789.3 708 58.6
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.3e-225 786.9 663 61.7
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 1.1e-224 783.9 700 58.4
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 3.3e-224 782.3 710 57.3
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.2e-223 780.4 781 54.4
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.6e-223 780.0 663 60.6
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.7e-223 778.5 748 57.0
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 4.7e-223 778.5 761 56.4
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 8.1e-223 777.7 1095 43.8
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 8.1e-223 777.7 756 56.5
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 8.1e-223 777.7 676 61.2
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.4e-222 776.2 658 62.6
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 3.1e-222 775.8 732 57.2
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 5.2e-222 775.0 676 60.9
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 6.8e-222 774.6 705 57.3
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 3.4e-221 772.3 692 58.5
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.9e-220 768.5 698 59.0
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 5.4e-219 765.0 761 56.8
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.4e-219 765.0 757 54.6
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 4.3e-216 755.4 707 57.0
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 1.6e-215 753.4 710 55.1
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.6e-215 753.4 749 54.1
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.1e-215 753.1 756 53.3
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 2.8e-215 752.7 721 55.9
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 8.1e-215 751.1 737 54.4
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.4e-214 750.4 760 55.1
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 2.4e-214 749.6 740 54.1
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 6.9e-214 748.0 757 53.6
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 9.0e-214 747.7 758 54.7
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 9.0e-214 747.7 605 64.3
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.2e-213 747.3 710 54.9
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.7e-212 743.4 710 54.8
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 4.9e-212 741.9 697 56.5
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 2.4e-211 739.6 739 53.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 4.2e-211 738.8 699 55.7
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 7.1e-211 738.0 636 58.8
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 8.7e-209 731.1 725 55.3
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 1.9e-208 729.9 709 55.7
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 9.6e-208 727.6 759 52.8
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.3e-207 727.2 742 53.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 9.0e-206 721.1 670 58.1
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 1.0e-201 707.6 724 53.0
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 3.0e-201 706.1 694 55.2
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 2.8e-199 699.5 639 56.7
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 9.3e-195 684.5 739 49.4
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.0e-193 681.0 738 49.3
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 1.3e-193 680.6 740 49.2
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 5.1e-193 678.7 744 51.3
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 6.7e-193 678.3 607 58.5
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 1.5e-192 677.2 740 49.1
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 5.7e-192 675.2 740 48.8
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.3e-191 674.1 651 56.4
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 8.2e-191 671.4 716 50.4
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.6e-183 647.1 699 51.6
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.5e-176 624.0 696 50.7
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.5e-171 606.7 606 52.1
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 3.7e-167 592.8 705 47.0
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 9.7e-160 568.2 673 49.6
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.9e-155 553.9 523 57.0
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.4e-142 511.1 400 65.5
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 6.4e-119 432.6 728 39.8
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.8e-114 417.2 416 54.3
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 7.3e-107 392.5 313 64.9
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.2e-106 391.7 632 39.1
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 6.0e-101 372.9 582 40.0
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 7.3e-99 365.9 628 37.6
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 4.4e-96 356.7 610 37.9
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 8.4e-87 325.9 348 50.3
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.6e-85 320.1 682 35.0
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.5e-83 315.1 247 64.8
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 7.4e-83 312.8 583 35.0
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 6.3e-58 229.9 587 31.2
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 7.2e-54 216.5 293 44.4
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 5.2e-44 183.7 633 24.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 2.2e-42 178.3 606 29.2
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 5.2e-36 157.1 783 23.0
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 2.0e-35 155.2 174 47.7
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.4e-33 148.3 258 39.9
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 7.0e-33 146.7 169 48.5
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.0e-28 131.3 127 57.5
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 3.0e-28 131.3 508 25.8
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.6e-24 119.0 145 45.5
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 8.9e-20 103.2 179 40.8
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 8.3e-18 96.7 92 53.3
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 9.2e-17 93.2 74 60.8
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 7.8e-16 90.1 79 64.6
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 1.0e-15 89.7 125 41.6
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 2.5e-14 85.1 114 39.5
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.5e-11 75.9 68 54.4
Dinv03716 Davidia involucrata HOM05D000349 ORTHO05D029215 1.1e-09 69.7 86 46.5
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-09 69.3 147 35.4
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.2e-08 66.2 154 35.7


User provided reference genes

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