Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01012552001 Vitis vinifera HOM05D001605 ORTHO05D007904 3.9e-73 278.1 147 100.0
GSVIVG01016203001 Vitis vinifera HOM05D001605 ORTHO05D007904 3.8e-12 75.5 40 97.5
Actinidia06735 Actinidia chinensis HOM05D001605 ORTHO05D007904 4.3e-11 72.0 54 70.4
Dinv31241 Davidia involucrata HOM05D001605 ORTHO05D007904 6.1e-10 68.2 40 82.5
Actinidia18543 Actinidia chinensis HOM05D001605 ORTHO05D007904 1.0e-09 67.4 40 80.0
ClCG08G007840 Citrullus lanatus HOM05D001605 ORTHO05D007904 2.3e-09 66.2 40 80.0
CsaV3_2G021080 Cucumis sativus L. HOM05D001605 ORTHO05D007904 2.3e-09 66.2 40 80.0
Manes.07G094600 Manihot esculenta HOM05D001605 ORTHO05D007904 3.1e-09 65.9 40 77.5
Cpa.g.sc53.150 Carica papaya HOM05D001605 ORTHO05D007904 6.8e-09 64.7 41 73.2
QL08p053377 Quercus lobata HOM05D001605 ORTHO05D007904 6.8e-09 64.7 40 80.0
Sed0007773 Sechium edule HOM05D001605 ORTHO05D007904 6.8e-09 64.7 40 80.0
Rhsim09G0146800 Rhododendron simsii HOM05D001605 ORTHO05D007904 8.9e-09 64.3 40 75.0
Potri.008G032800 Populus trichocarpa HOM05D001605 ORTHO05D007904 1.2e-08 63.9 40 77.5
Thecc.10G086900 Theobroma cacao HOM05D001605 ORTHO05D007904 1.2e-08 63.9 40 77.5
vmacro07188 Vaccinium macrocarpon HOM05D001605 ORTHO05D007904 1.5e-08 63.5 40 77.5
Lj3A937T101 Lonicera japonica HOM05D001605 ORTHO05D007904 2.0e-08 63.2 40 77.5
Peaxi162Scf00145g00221 Petunia axillaris HOM05D001605 ORTHO05D007904 2.0e-08 63.2 40 75.0
THA.LOC104816433 Tarenaya hassleriana HOM05D001605 ORTHO05D007904 2.0e-08 63.2 40 67.5
Cc02_g10740 Coffea canephora HOM05D001605 ORTHO05D007904 2.6e-08 62.8 40 75.0
Hma1.2p1_0736F.1_g210760 Hydrangea macrophylla HOM05D001605 ORTHO05D007904 2.6e-08 62.8 41 73.2
Hma1.2p1_1036F.1_g250525 Hydrangea macrophylla HOM05D001605 ORTHO05D007904 2.6e-08 62.8 41 73.2
Rhsim03G0113100 Rhododendron simsii HOM05D001605 ORTHO05D007904 2.6e-08 62.8 40 75.0
TWI15G0385 Tripterygium wilfordii HOM05D001605 ORTHO05D007904 2.6e-08 62.8 40 72.5
AL6G13920 Arabidopsis lyrata HOM05D001605 ORTHO05D007904 3.4e-08 62.4 40 70.0
AT5G04290 Arabidopsis thaliana HOM05D001605 ORTHO05D007904 3.4e-08 62.4 40 70.0
MBI06_g09273_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D007904 3.4e-08 62.4 40 75.0
Potri.010G228766 Populus trichocarpa HOM05D001605 ORTHO05D007904 3.4e-08 62.4 40 75.0
Duzib114G0274 Durio zibethinus HOM05D001605 ORTHO05D007904 4.4e-08 62.0 40 75.0
Eucgr.J01043 Eucalyptus grandis HOM05D001605 ORTHO05D007904 4.4e-08 62.0 40 75.0
MD01G1100800 Malus domestica HOM05D001605 ORTHO05D007904 5.8e-08 61.6 40 75.0
Sabra08G0021700 Salix brachista HOM05D001605 ORTHO05D007904 5.8e-08 61.6 40 75.0
ECA238G1123 Erigeron canadensis HOM05D001605 ORTHO05D007904 7.5e-08 61.2 40 70.0
Gohir.A10G201000 Gossypium hirsutum HOM05D001605 ORTHO05D007904 7.5e-08 61.2 40 75.0
Gohir.D10G208651 Gossypium hirsutum HOM05D001605 ORTHO05D007904 7.5e-08 61.2 40 75.0
Gorai.011G234600 Gossypium raimondii HOM05D001605 ORTHO05D007904 7.5e-08 61.2 40 75.0
HanXRQChr14g0456521 Helianthus annuus HOM05D001605 ORTHO05D007904 7.5e-08 61.2 40 72.5
Aa31LG1G21060 Aethionema arabicum HOM05D001605 ORTHO05D007904 9.8e-08 60.8 40 65.0
Ciclev10030480m.g Citrus clementina HOM05D001605 ORTHO05D007904 9.8e-08 60.8 40 72.5
PGR044G1910 Punica granatum HOM05D001605 ORTHO05D007904 9.8e-08 60.8 40 70.0
CiPaw.01G266900 Carya illinoinensis HOM05D001605 ORTHO05D007904 1.3e-07 60.5 40 75.0
MD07G1167800 Malus domestica HOM05D001605 ORTHO05D007904 1.3e-07 60.5 40 72.5
vmacro10246 Vaccinium macrocarpon HOM05D001807 ORTHO05D002044 1.3e-07 60.5 40 70.0
Carub.0006s0324 Capsella rubella HOM05D001605 ORTHO05D007904 1.7e-07 60.1 40 67.5
DCAR_024079 Daucus carota HOM05D001605 ORTHO05D007904 1.7e-07 60.1 40 70.0
CAN.G459.35 Capsicum annuum HOM05D001605 ORTHO05D007904 2.2e-07 59.7 40 70.0
Cfa001787 Carpinus fangiana HOM05D001605 ORTHO05D007904 2.2e-07 59.7 40 72.5
Migut.F01946 Erythranthe guttata HOM05D001605 ORTHO05D007904 2.2e-07 59.7 40 72.5
SGA_v2.0_scaffold62G21379 Striga asiatica HOM05D001605 ORTHO05D007904 2.2e-07 59.7 40 72.5
TAR636G1950 Trochodendron aralioides HOM05D001605 ORTHO05D007904 2.2e-07 59.7 40 70.0
Atru.chr12.877 Acer truncatum HOM05D001605 ORTHO05D007904 2.9e-07 59.3 40 72.5
arahy.Tifrunner.gnm1.ann1.MQG1NS Arachis hypogaea HOM05D001605 ORTHO05D007904 2.9e-07 59.3 53 58.5
arahy.Tifrunner.gnm1.ann1.NQY93W Arachis hypogaea HOM05D001605 ORTHO05D007904 2.9e-07 59.3 53 58.5
Haze_16757 Corylus avellana HOM05D001605 ORTHO05D007904 2.9e-07 59.3 54 61.1
Nn2g13838 Nelumbo nucifera HOM05D001605 ORTHO05D007904 2.9e-07 59.3 39 69.2
Nitab4.5_0002285g0040 Nicotiana tabacum HOM05D001605 ORTHO05D007904 3.7e-07 58.9 40 70.0
Nitab4.5_0004987g0010 Nicotiana tabacum HOM05D001605 ORTHO05D007904 3.7e-07 58.9 40 70.0
COL.COLO4_09867 Corchorus olitorius HOM05D001605 ORTHO05D007904 4.9e-07 58.5 40 70.0
MBI01_g12684_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D007904 4.9e-07 58.5 39 71.8
Solyc11g008150.3 Solanum lycopersicum HOM05D001605 ORTHO05D007904 4.9e-07 58.5 40 67.5
Sopen11g003960 Solanum pennellii HOM05D001605 ORTHO05D007904 4.9e-07 58.5 40 67.5
AUR62042514 Chenopodium quinoa HOM05D001605 ORTHO05D007904 6.4e-07 58.2 45 60.0
SalBow4G1337 Salvia bowleyana HOM05D001605 ORTHO05D007904 6.4e-07 58.2 40 67.5
Sp6g38450 Schrenkiella parvula HOM05D001605 ORTHO05D007904 6.4e-07 58.2 40 62.5
Lsat_1_v5_gn_2_112001 Lactuca sativa HOM05D001605 ORTHO05D007904 8.3e-07 57.8 42 71.4
Prupe.2G206300 Prunus persica HOM05D001605 ORTHO05D007904 8.3e-07 57.8 40 70.0
CARHR208990 Cardamine hirsuta HOM05D001605 ORTHO05D007904 1.1e-06 57.4 38 63.2
Zm00001eb352910 Zea mays HOM05D001605 ORTHO05D007904 1.1e-06 57.4 40 60.0
BcaC06g32132 Brassica carinata HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 62.5
BcaC06g32133 Brassica carinata HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 62.5
A10p31880 Brassica napus HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 62.5
C09p72590 Brassica napus HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 62.5
BolC9t59999H Brassica oleracea HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 62.5
BraA10t45232Z Brassica rapa HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 62.5
Phvul.007G024600 Phaseolus vulgaris HOM05D001605 ORTHO05D007904 1.4e-06 57.0 40 67.5
CDE02G1882 Ceratophyllum demersum HOM05D001605 ORTHO05D007904 1.9e-06 56.6 39 66.7
Lj2A22T71 Lonicera japonica HOM05D001605 ORTHO05D007904 1.9e-06 56.6 39 66.7
HPP92_015889 Vanilla planifolia HOM05D001605 ORTHO05D007904 1.9e-06 56.6 40 62.5
Ah.05g168450 Amaranthus hybridus HOM05D001605 ORTHO05D007904 2.4e-06 56.2 40 65.0
Glyma.10G276900 Glycine max HOM05D001605 ORTHO05D007904 3.2e-06 55.8 40 67.5
Glyma.20G112800 Glycine max HOM05D001605 ORTHO05D007904 3.2e-06 55.8 40 67.5
RcHm_v2.0_Chr1g0362241 Rosa chinensis HOM05D001605 ORTHO05D007904 3.2e-06 55.8 40 72.5
Psat6g230120 Pisum sativum HOM05D001605 ORTHO05D007904 4.1e-06 55.5 40 65.0
HPP92_015895 Vanilla planifolia HOM05D001605 ORTHO05D007904 4.1e-06 55.5 40 60.0
Ca_25646_v3 Cicer arietinum L. HOM05D001605 ORTHO05D007904 5.4e-06 55.1 39 66.7
Thhalv10015856m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 5.4e-06 55.1 39 61.5
Lsat_1_v5_gn_2_113220 Lactuca sativa HOM05D001605 ORTHO05D007904 5.4e-06 55.1 40 67.5
DCAR_006401 Daucus carota HOM05D001605 ORTHO05D007904 9.2e-06 54.3 41 58.5
Lalb_Chr06g0166251 Lupinus albus HOM05D001605 ORTHO05D007904 9.2e-06 54.3 40 65.0
Hund17736 Selenicereus undatus HOM05D001605 ORTHO05D007904 9.2e-06 54.3 40 62.5


User provided reference genes

Program Settings