Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 3.8e-128 461.5 222 100.0
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.8e-121 437.6 222 93.2
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 9.3e-119 430.3 220 93.2
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 2.7e-118 428.7 220 91.4
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.5e-118 428.3 221 91.4
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 2.3e-117 425.6 222 90.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 3.0e-117 425.2 222 89.6
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.1e-116 423.3 221 90.0
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.5e-116 422.9 221 90.0
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.5e-116 422.9 221 90.0
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.5e-116 422.2 222 89.2
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.5e-116 422.2 222 89.2
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 2.5e-116 422.2 222 89.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 3.3e-116 421.8 222 88.7
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 4.3e-116 421.4 221 89.6
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.3e-116 421.4 221 89.6
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 7.4e-116 420.6 221 89.6
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 7.4e-116 420.6 221 89.6
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.3e-115 419.9 222 88.7
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.3e-115 419.9 222 88.3
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.3e-115 419.9 222 89.6
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.6e-115 419.5 221 89.1
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.6e-115 419.5 222 88.7
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.1e-115 419.1 220 88.6
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 8.1e-115 417.2 222 87.8
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.1e-114 416.8 222 88.3
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.4e-114 416.4 221 88.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.8e-114 416.0 221 87.8
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.8e-114 416.0 221 88.7
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 3.1e-114 415.2 222 87.8
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 4.0e-114 414.8 221 88.2
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 6.9e-114 414.1 222 85.6
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.2e-113 413.3 222 86.9
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.4e-113 411.8 222 87.4
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 4.5e-113 411.4 222 86.0
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.8e-113 411.0 222 87.4
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 7.6e-113 410.6 222 88.7
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.0e-112 410.2 222 86.5
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.7e-112 409.5 222 86.0
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.2e-112 409.1 221 87.3
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.8e-112 408.3 222 86.0
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 4.9e-112 407.9 220 86.4
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 8.4e-112 407.1 220 86.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 8.4e-112 407.1 222 86.5
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.9e-111 406.0 242 81.4
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.9e-111 406.0 222 86.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.5e-111 405.6 222 86.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.5e-111 405.6 220 86.4
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 3.2e-111 405.2 222 85.6
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 3.2e-111 405.2 221 85.5
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 4.2e-111 404.8 222 85.1
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 9.3e-111 403.7 221 85.1
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.2e-110 403.3 222 84.2
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-110 403.3 222 84.2
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-110 403.3 222 84.2
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 1.2e-110 403.3 222 86.0
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.6e-110 402.9 222 84.2
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 2.7e-110 402.1 222 85.6
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.7e-110 402.1 220 86.4
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 2.7e-110 402.1 222 84.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.6e-110 401.4 222 83.8
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 4.6e-110 401.4 222 84.7
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 4.6e-110 401.4 222 84.7
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.8e-109 399.4 222 84.2
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.8e-109 399.4 222 84.7
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 3.9e-109 398.3 222 84.2
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 6.7e-109 397.5 222 84.7
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 6.7e-109 397.5 222 83.8
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 6.7e-109 397.5 221 85.1
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 5.7e-108 394.4 222 83.3
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 5.7e-108 394.4 222 83.3
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 9.6e-108 393.7 222 84.2
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 9.6e-108 393.7 222 84.2
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 1.3e-107 393.3 222 82.0
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.6e-107 392.9 221 83.7
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.8e-107 392.1 222 81.5
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 8.2e-107 390.6 222 83.3
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 4.1e-106 388.3 222 83.3
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 8.4e-104 380.6 219 82.2
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 3.2e-103 378.6 222 77.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-102 376.7 206 86.4
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.6e-102 374.8 210 83.3
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.3e-101 372.5 216 81.9
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 1.1e-98 363.6 222 79.7
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 7.7e-97 357.5 181 92.3
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.4e-95 353.2 307 61.9
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.6e-94 348.6 222 75.7
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 8.2e-91 337.4 222 70.7
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 8.2e-91 337.4 222 70.7
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 8.5e-88 327.4 222 68.0
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 9.7e-84 313.9 257 61.9
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-81 307.0 171 84.2
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 4.5e-81 305.1 372 47.8
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 6.5e-80 301.2 220 62.3
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 2.1e-78 296.2 153 88.9
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 2.7e-78 295.8 152 90.8
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.6e-78 295.4 222 67.1
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 4.7e-78 295.0 154 89.6
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.0e-77 293.9 222 66.7
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 7.5e-76 287.7 222 67.1
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 2.8e-75 285.8 167 82.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.6e-73 280.0 220 59.1
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.0e-68 263.1 220 57.3
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.1e-66 257.3 144 84.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 9.8e-60 234.2 205 54.1
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-57 227.3 179 63.1
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.2e-57 227.3 114 90.4
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 7.7e-57 224.6 112 90.2
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.8e-56 222.2 221 57.0
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.0e-53 212.6 172 63.4
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 5.4e-42 175.3 96 83.3
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.0e-40 168.7 125 69.6
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.2e-38 161.8 109 72.5
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 1.2e-36 157.5 78 91.0
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 6.6e-32 141.7 175 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-29 133.7 155 49.0
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.2e-27 126.7 62 91.9
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 3.6e-22 109.4 104 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 6.9e-21 105.1 78 64.1
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.2e-14 82.0 42 92.9
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.6e-09 67.4 68 54.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.6e-09 67.4 68 54.4


User provided reference genes

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