Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 5.0e-31 137.1 68 100.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 1.4e-17 92.4 52 86.5
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.1e-17 91.3 53 81.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 3.1e-17 91.3 57 77.2
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 3.1e-17 91.3 53 81.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 9.1e-17 89.7 53 79.2
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.0e-16 88.6 53 79.2
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.3e-15 85.9 53 75.5
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 5.0e-15 84.0 53 75.5
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 5.0e-15 84.0 52 75.0
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 6.5e-15 83.6 55 69.1
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 6.5e-15 83.6 52 78.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 8.5e-15 83.2 52 76.9
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 3.2e-14 81.3 54 70.4
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.2e-14 80.1 52 69.2
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 7.2e-14 80.1 50 72.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 7.2e-14 80.1 63 60.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 7.2e-14 80.1 52 69.2
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 9.4e-14 79.7 52 71.2
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 1.2e-13 79.3 66 62.1
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.6e-13 79.0 49 77.6
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.1e-13 78.6 52 71.2
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.1e-13 78.6 52 69.2
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.1e-13 78.6 55 65.5
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.1e-13 78.6 52 71.2
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.1e-13 78.6 52 69.2
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 2.1e-13 78.6 52 69.2
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.1e-13 78.6 65 61.5
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 2.7e-13 78.2 53 66.0
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 2.7e-13 78.2 53 66.0
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 3.6e-13 77.8 52 69.2
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.1e-13 77.0 52 71.2
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.1e-13 77.0 63 58.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 8.0e-13 76.6 50 70.0
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.0e-12 76.3 52 69.2
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.0e-12 76.3 52 67.3
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.0e-12 76.3 52 69.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 1.0e-12 76.3 53 64.2
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-12 75.9 52 71.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-12 75.9 52 71.2
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.4e-12 75.9 52 71.2
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.4e-12 75.9 52 71.2
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.4e-12 75.9 53 67.9
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-12 75.9 53 66.0
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.4e-12 75.9 52 69.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.4e-12 75.9 52 67.3
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.8e-12 75.5 52 69.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.3e-12 75.1 52 67.3
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.0e-12 74.7 52 69.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 3.0e-12 74.7 52 69.2
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.0e-12 74.7 52 71.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 3.0e-12 74.7 52 69.2
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 3.0e-12 74.7 57 59.6
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.0e-12 74.7 53 64.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.0e-12 74.3 61 59.0
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 5.2e-12 73.9 53 60.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 5.2e-12 73.9 52 67.3
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 6.8e-12 73.6 52 63.5
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 6.8e-12 73.6 52 65.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 6.8e-12 73.6 52 65.4
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.2e-11 72.8 52 63.5
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.2e-11 72.8 52 65.4
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.5e-11 72.4 52 63.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.5e-11 72.4 52 63.5
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.5e-11 72.4 52 65.4
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.5e-11 72.4 53 62.3
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.0e-11 72.0 53 64.2
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 2.6e-11 71.6 50 68.0
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.6e-11 71.6 52 65.4
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.4e-11 71.2 52 65.4
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.4e-11 70.9 53 64.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 5.7e-11 70.5 52 63.5
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 7.5e-11 70.1 52 63.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 7.5e-11 70.1 52 61.5
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 7.5e-11 70.1 52 61.5
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 7.5e-11 70.1 52 65.4
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 9.8e-11 69.7 56 58.9
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 9.8e-11 69.7 56 58.9
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 9.8e-11 69.7 53 60.4
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.3e-10 69.3 63 58.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.7e-10 68.9 50 68.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.7e-10 68.9 50 68.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.7e-10 68.9 52 59.6
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.7e-10 68.9 53 62.3
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.2e-10 68.6 52 67.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 2.2e-10 68.6 50 66.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 2.8e-10 68.2 52 59.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.7e-10 67.8 65 53.8
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 6.3e-10 67.0 53 60.4
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 8.3e-10 66.6 53 60.4
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 8.3e-10 66.6 52 57.7
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 8.3e-10 66.6 52 57.7
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 8.3e-10 66.6 52 57.7
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 8.3e-10 66.6 52 57.7
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.1e-09 66.2 53 60.4
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.4e-09 65.9 53 60.4
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 2.4e-09 65.1 65 52.3
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.4e-09 65.1 53 56.6
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.4e-09 65.1 59 55.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.4e-09 65.1 50 62.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.1e-09 64.7 59 55.9
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.1e-09 64.7 52 57.7
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.0e-09 63.5 61 54.1
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 7.0e-09 63.5 52 55.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 7.0e-09 63.5 50 60.0
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 9.1e-09 63.2 63 52.4
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 9.1e-09 63.2 52 57.7
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-08 62.8 52 57.7
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-08 62.8 54 59.3
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.2e-08 62.8 54 59.3
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.2e-08 62.8 54 59.3
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.2e-08 62.8 52 55.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.2e-08 62.8 48 60.4
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.6e-08 62.4 50 56.0
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-08 61.6 54 57.4
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.7e-08 61.6 54 57.4
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 4.5e-08 60.8 62 48.4
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 7.7e-08 60.1 46 60.9
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 7.7e-08 60.1 40 72.5
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.0e-07 59.7 52 51.9
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-07 59.3 56 53.6
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 1.3e-07 59.3 56 53.6
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 1.3e-07 59.3 56 53.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.3e-07 59.3 52 53.8
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-07 58.5 69 43.5
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 2.3e-07 58.5 40 67.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 2.9e-07 58.2 55 50.9
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.6e-07 57.0 52 57.7
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.1e-06 56.2 40 70.0
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.5e-06 55.8 62 45.2
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.9e-06 55.5 61 49.2
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 3.3e-06 54.7 56 50.0


User provided reference genes

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