Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 5.3e-212 740.7 367 100.0
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.2e-203 713.0 367 94.8
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 5.0e-202 707.6 368 95.4
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 1.1e-201 706.4 368 94.3
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 5.5e-201 704.1 368 93.2
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 9.4e-201 703.4 368 94.0
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 2.1e-200 702.2 368 94.6
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 3.6e-200 701.4 369 93.2
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 6.1e-200 700.7 368 94.3
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 1.0e-199 699.9 369 94.0
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 1.4e-199 699.5 368 94.0
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.0e-199 698.4 368 92.9
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.0e-199 698.4 368 92.9
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 8.8e-199 696.8 368 92.9
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 8.8e-199 696.8 368 93.8
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 8.8e-199 696.8 368 92.9
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.5e-198 696.0 368 92.4
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.0e-198 695.7 368 92.9
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 2.0e-198 695.7 368 92.7
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 2.6e-198 695.3 368 92.9
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 2.6e-198 695.3 368 93.2
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 2.6e-198 695.3 368 93.5
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 2.6e-198 695.3 368 92.1
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 4.4e-198 694.5 368 92.4
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 4.4e-198 694.5 368 92.1
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 5.7e-198 694.1 368 92.7
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 5.7e-198 694.1 368 92.1
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 7.5e-198 693.7 368 92.9
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 1.3e-197 693.0 368 91.8
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.3e-197 693.0 368 92.4
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 1.3e-197 693.0 368 91.6
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.7e-197 692.6 368 92.9
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 2.8e-197 691.8 368 92.1
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 3.7e-197 691.4 368 92.4
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 8.2e-197 690.3 368 92.1
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 8.2e-197 690.3 368 91.6
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.1e-196 689.9 368 92.9
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.1e-196 689.9 369 92.7
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 1.8e-196 689.1 368 91.8
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 1.8e-196 689.1 368 91.3
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 2.4e-196 688.7 368 91.6
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 2.4e-196 688.7 376 91.5
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 3.1e-196 688.3 368 91.3
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 3.1e-196 688.3 369 91.9
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 4.1e-196 688.0 367 92.1
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 7.0e-196 687.2 367 91.3
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 7.0e-196 687.2 368 92.4
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 1.2e-195 686.4 367 91.0
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 2.7e-195 685.3 368 91.8
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 2.7e-195 685.3 368 91.3
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.7e-194 682.6 367 90.7
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.7e-194 682.6 368 90.2
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.2e-194 682.2 368 89.9
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 3.8e-194 681.4 368 91.3
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 5.0e-194 681.0 368 90.8
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 5.0e-194 681.0 368 91.3
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.1e-193 679.9 368 89.9
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 4.2e-193 677.9 368 89.7
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 5.5e-193 677.6 369 90.2
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.2e-193 677.2 368 89.7
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.2e-192 676.4 367 88.0
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.6e-192 676.0 369 90.0
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.1e-192 675.6 369 90.5
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 2.7e-192 675.2 368 90.5
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 3.6e-192 674.9 368 90.2
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.0e-191 673.3 368 90.2
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.0e-191 673.3 368 89.7
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 8.8e-191 670.2 368 88.3
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 1.5e-190 669.5 368 89.4
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 1.5e-190 669.5 368 89.4
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 2.0e-190 669.1 368 89.1
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.6e-190 668.7 368 88.9
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 3.4e-190 668.3 368 89.1
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 4.4e-190 667.9 368 88.0
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 5.7e-190 667.5 368 88.9
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 6.3e-189 664.1 368 87.5
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 7.0e-188 660.6 356 90.7
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 9.1e-188 660.2 364 87.4
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 2.0e-187 659.1 368 87.2
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 2.7e-187 658.7 367 86.4
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 2.7e-187 658.7 368 86.7
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 5.9e-187 657.5 367 86.1
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 5.9e-187 657.5 368 87.0
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.9e-187 657.5 367 87.7
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 5.9e-187 657.5 368 87.2
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 1.7e-186 656.0 367 87.5
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 5.0e-186 654.4 367 86.6
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 6.5e-186 654.1 368 86.7
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.1e-185 653.3 368 86.7
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.5e-185 652.9 368 87.0
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 3.2e-185 651.7 367 86.1
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 9.5e-185 650.2 368 86.4
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 2.1e-184 649.0 368 87.2
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 2.7e-184 648.7 380 84.2
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.0e-183 646.7 368 86.7
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 3.0e-183 645.2 368 86.1
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 4.0e-183 644.8 368 86.4
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 4.0e-183 644.8 368 86.4
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-182 643.3 368 86.1
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 2.0e-182 642.5 368 86.1
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 3.7e-181 638.3 364 85.4
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 1.1e-180 636.7 335 93.1
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 1.1e-180 636.7 368 85.6
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 7.0e-180 634.0 376 84.0
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.1e-177 626.7 432 74.8
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.8e-176 622.1 368 84.5
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 6.1e-176 620.9 368 84.5
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 1.2e-174 616.7 319 94.4
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.2e-172 608.6 368 79.6
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 2.0e-171 605.9 368 77.4
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 3.9e-170 601.7 366 79.2
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 1.6e-168 596.3 368 78.3
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 1.0e-167 593.6 316 92.4
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.4e-166 588.6 366 77.9
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 2.4e-156 555.8 366 72.7
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 2.8e-152 542.3 317 82.6
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 4.0e-151 538.5 368 70.9
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 2.0e-150 536.2 362 76.0
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 4.4e-150 535.0 365 70.1
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.7e-149 533.1 328 79.3
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.6e-147 526.6 279 92.1
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.9e-140 503.1 367 65.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 3.5e-139 498.8 288 85.1
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 3.7e-128 462.2 299 78.6
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 6.2e-120 434.9 379 62.5
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 6.5e-117 424.9 267 83.1
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.6e-107 393.7 280 74.3
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 7.7e-70 268.5 348 43.4
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 1.9e-68 263.8 324 44.4
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 3.0e-58 229.9 122 91.0
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 8.6e-53 211.8 118 89.0
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 5.4e-47 192.6 113 80.5
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.1e-34 151.8 84 86.9
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 7.1e-31 139.0 84 79.8
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 4.6e-30 136.3 84 77.4
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 1.3e-29 134.8 125 64.0
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 2.9e-24 117.1 57 93.0
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.9e-23 114.4 79 73.4
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 3.8e-16 90.1 194 32.0
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 6.7e-13 79.3 57 71.9
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 5.3e-10 69.7 40 77.5
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 1.7e-08 64.7 66 54.5
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 2.2e-08 64.3 35 88.6
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 4.6e-06 56.6 156 28.8


User provided reference genes

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