Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01007966001 Vitis vinifera HOM05D003878 ORTHO05D003857 8.9e-75 283.5 140 100.0
GSVIVG01007970001 Vitis vinifera HOM05D003878 ORTHO05D003857 6.7e-30 134.4 104 65.4
CiPaw.11G047100 Carya illinoinensis HOM05D003878 ORTHO05D003857 2.1e-23 112.8 99 58.6
Sed0008795 Sechium edule HOM05D003878 ORTHO05D003857 1.3e-22 110.2 99 57.6
THA.LOC104801462 Tarenaya hassleriana HOM05D003878 ORTHO05D003857 1.8e-22 109.8 88 62.5
Atru.chr9.336 Acer truncatum HOM05D003878 ORTHO05D003857 2.3e-22 109.4 104 54.8
GSVIVG01007965001 Vitis vinifera HOM05D003878 ORTHO05D003857 2.3e-22 109.4 105 51.4
Actinidia19020 Actinidia chinensis HOM05D003878 ORTHO05D003857 3.0e-22 109.0 127 48.0
Manes.14G081500 Manihot esculenta HOM05D003878 ORTHO05D003857 3.9e-22 108.6 108 53.7
Aa31LG11G2040 Aethionema arabicum HOM05D003878 ORTHO05D003857 6.7e-22 107.8 88 60.2
CSS0032055 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 8.7e-22 107.5 104 52.9
QL10p017674 Quercus lobata HOM05D003878 ORTHO05D003857 8.7e-22 107.5 89 59.6
TPR.G681 Trifolium pratense HOM05D003878 ORTHO05D003857 1.1e-21 107.1 102 53.9
Actinidia35011 Actinidia chinensis HOM05D003878 ORTHO05D003857 1.5e-21 106.7 109 51.4
Psat4g049800 Pisum sativum HOM05D003878 ORTHO05D003857 1.5e-21 106.7 103 52.4
Cfa018911 Carpinus fangiana HOM05D003878 ORTHO05D003857 1.9e-21 106.3 99 55.6
Haze_07295 Corylus avellana HOM05D001764 ORTHO05D003857 1.9e-21 106.3 97 56.7
Medtr4g108880 Medicago truncatula HOM05D003878 ORTHO05D003857 1.9e-21 106.3 97 55.7
A03p46980 Brassica napus HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
C07p45020 Brassica napus HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
BolC7t45025H Brassica oleracea HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
BraA03t13822Z Brassica rapa HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
DCAR_016576 Daucus carota HOM05D003878 ORTHO05D003857 3.3e-21 105.5 99 55.6
Thhalv10003924m.g Eutrema salsugineum HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
Lalb_Chr07g0178171 Lupinus albus HOM05D003878 ORTHO05D003857 3.3e-21 105.5 108 52.8
Phvul.009G185500 Phaseolus vulgaris HOM05D003878 ORTHO05D003857 3.3e-21 105.5 100 56.0
PGR062G0001 Punica granatum HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
PGR083G0168 Punica granatum HOM05D003878 ORTHO05D003857 3.3e-21 105.5 88 60.2
Dinv38743 Davidia involucrata HOM05D003878 ORTHO05D003857 4.3e-21 105.1 101 55.4
Gohir.A03G067700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 4.3e-21 105.1 109 50.5
Gohir.D03G094200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 4.3e-21 105.1 109 50.5
Gorai.003G098300 Gossypium raimondii HOM05D003878 ORTHO05D003857 4.3e-21 105.1 109 50.5
Lalb_Chr08g0235491 Lupinus albus HOM05D003878 ORTHO05D003857 5.6e-21 104.8 98 57.1
Ciclev10019534m.g Citrus clementina HOM05D003878 ORTHO05D003857 7.4e-21 104.4 109 48.6
Cc04_g14990 Coffea canephora HOM05D003878 ORTHO05D003857 7.4e-21 104.4 97 54.6
Manes.06G089800 Manihot esculenta HOM05D003878 ORTHO05D003857 7.4e-21 104.4 100 55.0
CANSAT80G1069 Cannabis sativa HOM05D003878 ORTHO05D003857 9.6e-21 104.0 88 58.0
Cpa.g.sc13.294 Carica papaya HOM05D003878 ORTHO05D003857 1.3e-20 103.6 90 61.1
Glyma.04G166300 Glycine max HOM05D003878 ORTHO05D003857 1.3e-20 103.6 88 61.4
SGA_v2.0_scaffold25G10935 Striga asiatica HOM05D001764 ORTHO05D001946 1.3e-20 103.6 110 51.8
VMungo1309G1477 Vigna mungo HOM05D003878 ORTHO05D003857 1.3e-20 103.6 100 55.0
AL8G38050 Arabidopsis lyrata HOM05D003878 ORTHO05D003857 1.6e-20 103.2 88 59.1
MSTRG.4440 Avicennia marina HOM05D003878 ORTHO05D003857 1.6e-20 103.2 88 58.0
BcaC04g23454 Brassica carinata HOM05D003878 ORTHO05D003857 1.6e-20 103.2 88 58.0
Carub.0008s2205 Capsella rubella HOM05D003878 ORTHO05D003857 1.6e-20 103.2 88 59.1
CARHR275140 Cardamine hirsuta HOM05D003878 ORTHO05D003857 1.6e-20 103.2 88 59.1
COL.COLO4_36941 Corchorus olitorius HOM05D003878 ORTHO05D003857 1.6e-20 103.2 109 51.4
HanXRQChr02g0043181 Helianthus annuus HOM05D003878 ORTHO05D003857 1.6e-20 103.2 104 53.8
Prupe.5G198000 Prunus persica HOM05D003878 ORTHO05D003857 1.6e-20 103.2 109 50.5
Sp2g24590 Schrenkiella parvula HOM05D003878 ORTHO05D003857 1.6e-20 103.2 88 59.1
BcaB04g19909 Brassica carinata HOM05D003878 ORTHO05D003857 2.1e-20 102.8 107 50.5
Ca_21808_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 2.1e-20 102.8 102 51.0
Duzib068G0503 Durio zibethinus HOM05D003878 ORTHO05D003857 2.1e-20 102.8 109 50.5
MD06G1197300 Malus domestica HOM05D003878 ORTHO05D003857 2.1e-20 102.8 88 59.1
Oeu047002.2 Olea europaea HOM05D003878 ORTHO05D003857 2.1e-20 102.8 88 58.0
TAR369G0188 Trochodendron aralioides HOM05D003878 ORTHO05D003857 2.1e-20 102.8 97 53.6
ClCG04G012090 Citrullus lanatus HOM05D003878 ORTHO05D003857 2.8e-20 102.4 88 59.1
MELO3C001999.2 Cucumis melo HOM05D003878 ORTHO05D003857 2.8e-20 102.4 88 59.1
CsaV3_1G005680 Cucumis sativus L. HOM05D003878 ORTHO05D003857 2.8e-20 102.4 88 59.1
Hma1.2p1_0322F.1_g125070 Hydrangea macrophylla HOM05D003878 ORTHO05D003857 2.8e-20 102.4 101 54.5
AT5G61380 Arabidopsis thaliana HOM05D003878 ORTHO05D003857 3.7e-20 102.1 88 58.0
BraA09t36379Z Brassica rapa HOM05D003878 ORTHO05D003857 3.7e-20 102.1 88 58.0
ECA247G3052 Erigeron canadensis HOM05D003878 ORTHO05D003857 3.7e-20 102.1 88 56.8
Glyma.17G102200 Glycine max HOM05D003878 ORTHO05D003857 3.7e-20 102.1 97 54.6
Lj4g0002884 Lotus japonicus HOM05D003878 ORTHO05D003857 3.7e-20 102.1 109 50.5
Potri.015G061900 Populus trichocarpa HOM05D003878 ORTHO05D003857 3.7e-20 102.1 88 58.0
C09p08170 Brassica napus HOM05D003878 ORTHO05D003857 4.8e-20 101.7 88 56.8
BolC9t53729H Brassica oleracea HOM05D003878 ORTHO05D003857 4.8e-20 101.7 88 56.8
Dinv10655 Davidia involucrata HOM05D003878 ORTHO05D003857 4.8e-20 101.7 88 58.0
MD14G1204700 Malus domestica HOM05D003878 ORTHO05D003857 4.8e-20 101.7 88 59.1
Rhsim12G0154100 Rhododendron simsii HOM05D003878 ORTHO05D003857 4.8e-20 101.7 89 57.3
vmacro16524 Vaccinium macrocarpon HOM05D003878 ORTHO05D003857 4.8e-20 101.7 89 57.3
Aqoxy3G03485 Aquilegia oxysepala HOM05D003878 ORTHO05D003857 8.1e-20 100.9 97 51.5
Sabra15G0086900 Salix brachista HOM05D003878 ORTHO05D003857 8.1e-20 100.9 88 56.8
Sed0015977 Sechium edule HOM05D003878 ORTHO05D003857 8.1e-20 100.9 88 56.8
Thecc.03G093700 Theobroma cacao HOM05D003878 ORTHO05D003857 8.1e-20 100.9 88 58.0
TAR625G0726 Trochodendron aralioides HOM05D003878 ORTHO05D003857 8.1e-20 100.9 97 52.6
CAN.G479.63 Capsicum annuum HOM05D003878 ORTHO05D003857 1.1e-19 100.5 88 56.8
SalBow7G4352 Salvia bowleyana HOM05D003878 ORTHO05D003857 1.1e-19 100.5 97 52.6
Os02g0618200 Oryza sativa ssp. japonica HOM05D003878 ORTHO05D003857 1.4e-19 100.1 88 55.7
Ca_14691_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 1.8e-19 99.8 102 52.0
Ca_30947_v3 Cicer arietinum L. HOM05D003878 ORTHO05D003857 1.8e-19 99.8 102 52.0
Lj9C466G6 Lonicera japonica HOM05D003878 ORTHO05D003857 1.8e-19 99.8 110 50.0
Nn2g10380 Nelumbo nucifera HOM05D003878 ORTHO05D003857 1.8e-19 99.8 104 51.0
VMungo1215G0660 Vigna mungo HOM05D003878 ORTHO05D003857 1.8e-19 99.8 97 53.6
arahy.Tifrunner.gnm1.ann1.2F1UPX Arachis hypogaea HOM05D003878 ORTHO05D003857 2.4e-19 99.4 109 48.6
arahy.Tifrunner.gnm1.ann1.D90B1M Arachis hypogaea HOM05D003878 ORTHO05D003857 2.4e-19 99.4 109 48.6
Glyma.06G196200 Glycine max HOM05D003878 ORTHO05D003857 2.4e-19 99.4 88 58.0
Migut.I00209 Erythranthe guttata HOM05D003878 ORTHO05D003857 3.1e-19 99.0 88 56.8
Prupe.5G197900 Prunus persica HOM05D003878 ORTHO05D003857 3.1e-19 99.0 109 49.5
TPR.G11840 Trifolium pratense HOM05D003878 ORTHO05D003857 3.1e-19 99.0 100 53.0
Duzib205G1832 Durio zibethinus HOM05D003878 ORTHO05D003857 4.0e-19 98.6 114 49.1
FvH4_5g14560 Fragaria vesca HOM05D003878 ORTHO05D003857 4.0e-19 98.6 112 48.2
Oeu006383.1 Olea europaea HOM05D003878 ORTHO05D003857 4.0e-19 98.6 104 49.0
TAR629G1644 Trochodendron aralioides HOM05D003878 ORTHO05D003857 4.0e-19 98.6 99 52.5
FAN18G1413 Fragaria x ananassa HOM05D003878 ORTHO05D003857 5.3e-19 98.2 105 51.4
RcHm_v2.0_Chr7g0181991 Rosa chinensis HOM05D003878 ORTHO05D003857 5.3e-19 98.2 120 44.2
Solyc03g115770.3 Solanum lycopersicum HOM05D003878 ORTHO05D003857 5.3e-19 98.2 88 55.7
Sopen03g034750 Solanum pennellii HOM05D003878 ORTHO05D003857 5.3e-19 98.2 88 55.7
PGSC0003DMG400019518 Solanum tuberosum HOM05D003878 ORTHO05D003857 5.3e-19 98.2 88 55.7
TWI60G1095 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 5.3e-19 98.2 88 54.5
FAN13G2746 Fragaria x ananassa HOM05D003878 ORTHO05D003857 6.9e-19 97.8 103 51.5
Lsat_1_v5_gn_1_14320 Lactuca sativa HOM05D003878 ORTHO05D003857 6.9e-19 97.8 104 51.9
Ah.02g113730 Amaranthus hybridus HOM05D003878 ORTHO05D003857 9.0e-19 97.4 98 50.0
RcHm_v2.0_Chr7g0182001 Rosa chinensis HOM05D003878 ORTHO05D003857 9.0e-19 97.4 88 56.8
unitig_0.g775 Utricularia gibba HOM05D003878 ORTHO05D003857 1.2e-18 97.1 88 54.5
TWI15G0625 Tripterygium wilfordii HOM05D003878 ORTHO05D003857 1.5e-18 96.7 88 54.5
PGSC0003DMG400033048 Solanum tuberosum HOM05D003878 ORTHO05D003857 2.0e-18 96.3 88 54.5
TAR623G0526 Trochodendron aralioides HOM05D003878 ORTHO05D003857 2.0e-18 96.3 102 50.0
ATR0680G414 Amborella trichopoda HOM05D003878 ORTHO05D003857 2.6e-18 95.9 100 50.0
FAN08G1337 Fragaria x ananassa HOM05D003878 ORTHO05D003857 2.6e-18 95.9 103 50.5
Lsat_1_v5_gn_5_21481 Lactuca sativa HOM05D003878 ORTHO05D003857 2.6e-18 95.9 115 49.6
PSO063G5546 Papaver somniferum HOM05D003878 ORTHO05D003857 2.6e-18 95.9 88 54.5
PSO198G0128 Papaver somniferum HOM05D003878 ORTHO05D003857 2.6e-18 95.9 88 54.5
Nn5g26927 Nelumbo nucifera HOM05D003878 ORTHO05D003857 3.4e-18 95.5 104 48.1
Solyc06g069690.4 Solanum lycopersicum HOM05D003878 ORTHO05D003857 3.4e-18 95.5 88 53.4
Hund09823 Selenicereus undatus HOM05D003878 ORTHO05D003857 4.5e-18 95.1 104 50.0
Zm00001eb247330 Zea mays HOM05D003878 ORTHO05D003857 4.5e-18 95.1 88 52.3
Migut.D01764 Erythranthe guttata HOM05D003878 ORTHO05D003857 5.8e-18 94.7 88 51.1
Medtr3g037390 Medicago truncatula HOM05D003878 ORTHO05D003857 5.8e-18 94.7 97 52.6
Sopen06g026990 Solanum pennellii HOM05D003878 ORTHO05D003857 7.6e-18 94.4 88 53.4
Psat5g199360 Pisum sativum HOM05D003878 ORTHO05D003857 1.0e-17 94.0 88 55.7
MBI05_g41786_MAGBIO Magnolia biondii HOM05D003878 ORTHO05D003857 1.3e-17 93.6 87 54.0
AUR62021636 Chenopodium quinoa HOM05D003878 ORTHO05D003857 1.7e-17 93.2 105 45.7
Actinidia37611 Actinidia chinensis HOM05D003878 ORTHO05D003857 2.2e-17 92.8 98 50.0
Dinv10653 Davidia involucrata HOM05D003878 ORTHO05D003857 3.8e-17 92.0 94 52.1
FvH4_5g14580 Fragaria vesca HOM05D003878 ORTHO05D003857 3.8e-17 92.0 100 47.0
FAN18G2514 Fragaria x ananassa HOM05D003878 ORTHO05D003857 3.8e-17 92.0 100 47.0
CDE09G1270 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 1.1e-16 90.5 89 51.7
Lj5A108G51 Lonicera japonica HOM05D003878 ORTHO05D003857 1.9e-16 89.7 123 42.3
CDE02G0803 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 2.5e-16 89.4 89 50.6
PSO478G1572 Papaver somniferum HOM05D003878 ORTHO05D003857 1.2e-15 87.0 89 49.4
Nitab4.5_0001211g0280 Nicotiana tabacum HOM05D003878 ORTHO05D003857 7.9e-15 84.3 121 42.1
PSO017G0340 Papaver somniferum HOM05D003878 ORTHO05D003857 7.9e-15 84.3 89 48.3
Cc04_g15190 Coffea canephora HOM05D003878 ORTHO05D003857 1.0e-14 84.0 114 38.6
Nitab4.5_0005900g0090 Nicotiana tabacum HOM05D003878 ORTHO05D003857 1.0e-14 84.0 121 42.1
Ah.11g048230 Amaranthus hybridus HOM05D003878 ORTHO05D003857 1.8e-14 83.2 127 39.4
HanXRQChr08g0236661 Helianthus annuus HOM05D003878 ORTHO05D003857 1.8e-14 83.2 88 52.3
Oeu024449.1 Olea europaea HOM05D003878 ORTHO05D003857 2.3e-14 82.8 97 43.3
CSS0027901 Camellia sinensis var. sinensis HOM05D003878 ORTHO05D003857 5.1e-14 81.6 69 59.4
HPP92_009069 Vanilla planifolia HOM05D003878 ORTHO05D003857 8.7e-14 80.9 87 46.0
QL10p017642 Quercus lobata HOM05D003878 ORTHO05D003857 1.1e-13 80.5 100 47.0
EL10Ac5g11059 Beta vulgaris HOM05D003878 ORTHO05D003857 3.3e-13 79.0 144 35.4
unitig_60.g25802 Utricularia gibba HOM05D003878 ORTHO05D003857 2.8e-12 75.9 64 59.4
FAN13G3320 Fragaria x ananassa HOM05D001764 ORTHO05D003857 3.7e-12 75.5 89 46.1
Migut.D01765 Erythranthe guttata HOM05D003878 ORTHO05D003857 8.2e-12 74.3 84 45.2
Mapoly0085s0081 Marchantia polymorpha HOM05D003878 ORTHO05D003857 1.1e-11 73.9 97 42.3
CAN.G587.10 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-11 73.6 84 44.0
MSTRG.9618 Avicennia marina HOM05D003878 ORTHO05D003857 1.8e-11 73.2 84 45.2
Nitab4.5_0010874g0010 Nicotiana tabacum HOM05D003878 ORTHO05D003857 2.4e-11 72.8 83 43.4
SMO358G0608 Selaginella moellendorffii HOM05D003878 ORTHO05D003857 5.3e-11 71.6 86 39.5
AUR62008459 Chenopodium quinoa HOM05D003878 ORTHO05D003857 5.9e-10 68.2 73 46.6
Gohir.D07G083200 Gossypium hirsutum HOM05D003878 ORTHO05D003857 3.8e-09 65.5 68 50.0
Gohir.D13G087700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 1.9e-08 63.2 57 54.4
Gorai.007G317900 Gossypium raimondii HOM05D003878 ORTHO05D003857 4.2e-08 62.0 58 53.4
Gorai.005G145700 Gossypium raimondii HOM05D003878 ORTHO05D003857 7.2e-08 61.2 58 53.4
Gohir.D11G114700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 9.3e-08 60.8 68 48.5
Gohir.D11G294700 Gossypium hirsutum HOM05D003878 ORTHO05D003857 9.3e-08 60.8 58 51.7
RcHm_v2.0_Chr7g0181971 Rosa chinensis HOM05D003878 ORTHO05D003857 6.1e-07 58.2 72 47.2
unitig_37.g11994 Utricularia gibba HOM05D001073 ORTHO05D002392 6.1e-07 58.2 88 34.1
CDE07G1945 Ceratophyllum demersum HOM05D003878 ORTHO05D003857 6.7e-06 54.7 58 44.8
SEGI_11051 Sequoiadendron giganteum HOM05D003878 ORTHO05D003857 6.7e-06 54.7 56 44.6
unitig_92.g28241 Utricularia gibba HOM05D001073 ORTHO05D002392 6.7e-06 54.7 82 34.1
Phvul.009G258300 Phaseolus vulgaris HOM05D001073 ORTHO05D002392 8.7e-06 54.3 107 29.9
SalBow2G2266 Salvia bowleyana HOM05D001073 ORTHO05D002392 8.7e-06 54.3 108 29.6


User provided reference genes

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