Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.7e-274 948.0 456 100.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.5e-269 932.2 456 97.6
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 7.7e-269 929.9 456 97.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-268 928.3 456 97.1
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 2.9e-268 927.9 456 97.4
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 5.0e-268 927.2 456 97.1
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 8.5e-268 926.4 456 97.1
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.1e-267 926.0 455 97.1
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.4e-267 925.6 456 96.5
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.9e-267 925.2 454 97.4
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 2.5e-267 924.9 456 97.1
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.2e-267 923.3 454 96.9
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 7.2e-267 923.3 456 97.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 9.4e-267 922.9 454 97.4
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.6e-266 922.2 455 96.7
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.1e-266 921.8 454 96.7
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 2.7e-266 921.4 456 96.7
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 4.7e-266 920.6 456 96.1
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 6.1e-266 920.2 456 96.3
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 7.9e-266 919.8 456 95.8
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 7.9e-266 919.8 455 96.0
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.0e-265 919.5 454 96.9
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.0e-265 919.5 456 96.1
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.4e-265 919.1 456 96.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-265 919.1 456 96.1
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.4e-265 919.1 456 96.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 1.8e-265 918.7 456 96.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 1.8e-265 918.7 456 96.7
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 2.3e-265 918.3 456 96.5
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.3e-265 918.3 456 96.5
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 3.0e-265 917.9 456 95.8
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 3.0e-265 917.9 454 96.3
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.9e-265 917.5 456 95.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 3.9e-265 917.5 456 95.4
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 3.9e-265 917.5 456 95.8
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 3.9e-265 917.5 456 96.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 5.2e-265 917.1 456 95.4
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.2e-265 917.1 454 96.0
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.2e-265 917.1 454 96.0
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 5.2e-265 917.1 454 96.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 6.7e-265 916.8 456 95.6
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.7e-265 916.8 456 95.4
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 6.7e-265 916.8 456 95.4
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 8.8e-265 916.4 456 95.8
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.1e-264 916.0 454 96.5
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.5e-264 915.6 456 95.6
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.5e-264 915.6 456 96.1
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.5e-264 915.6 454 95.8
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.5e-264 915.6 456 95.6
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 2.0e-264 915.2 454 96.0
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.0e-264 915.2 454 96.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.0e-264 915.2 454 96.0
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.6e-264 914.8 454 95.6
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 2.6e-264 914.8 456 95.0
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 4.4e-264 914.1 456 95.4
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 4.4e-264 914.1 456 95.4
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.4e-264 914.1 488 91.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 5.7e-264 913.7 455 95.8
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 5.7e-264 913.7 456 95.2
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 5.7e-264 913.7 456 95.2
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 5.7e-264 913.7 456 95.2
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 5.7e-264 913.7 454 95.6
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 5.7e-264 913.7 456 95.2
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 7.4e-264 913.3 454 96.0
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 9.7e-264 912.9 454 95.4
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 9.7e-264 912.9 456 95.4
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 9.7e-264 912.9 454 96.0
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.3e-263 912.5 456 95.0
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.3e-263 912.5 456 95.0
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.3e-263 912.5 456 95.8
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.7e-263 912.1 456 95.4
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.7e-263 912.1 456 95.4
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 2.2e-263 911.8 454 95.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.2e-263 911.8 455 95.4
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 2.8e-263 911.4 456 95.0
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 3.7e-263 911.0 456 95.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 6.3e-263 910.2 456 94.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 8.2e-263 909.8 456 95.2
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 8.2e-263 909.8 456 95.0
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.8e-262 908.7 456 94.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.8e-262 908.7 456 94.5
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.4e-262 908.3 477 92.2
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 5.3e-262 907.1 456 94.5
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.6e-261 905.6 455 93.8
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.5e-261 904.4 455 95.4
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 5.0e-260 900.6 454 94.3
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 6.1e-258 893.6 490 88.8
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 1.0e-257 892.9 453 91.8
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 9.7e-256 886.3 456 93.2
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.7e-255 885.6 454 91.2
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.8e-255 884.8 509 85.5
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.8e-254 882.1 454 91.2
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 5.9e-253 877.1 486 88.1
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.2e-252 875.2 454 90.1
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.2e-252 875.2 454 90.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.4e-248 861.3 465 89.9
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 4.5e-245 850.9 454 91.0
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.9e-235 818.9 408 96.8
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.0e-233 813.1 416 94.7
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.7e-231 805.8 456 84.0
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.0e-229 798.9 390 97.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.6e-224 781.9 416 92.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 9.5e-219 763.5 456 83.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 9.5e-219 763.5 459 79.1
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.2e-218 763.1 416 90.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.1e-198 696.8 461 77.2
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.8e-194 682.2 456 76.8
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 6.9e-193 677.6 456 76.3
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 2.9e-191 672.2 331 97.0
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.8e-186 655.6 433 74.8
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.4e-185 653.3 317 98.1
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.4e-182 642.5 403 76.4
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.7e-173 612.5 456 70.0
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.1e-170 602.8 456 69.7
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.1e-170 602.8 312 91.3
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 9.3e-166 587.4 281 98.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.9e-151 539.3 403 70.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.9e-148 528.9 262 95.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.5e-134 483.0 454 57.5
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 7.7e-128 461.5 293 79.5
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.6e-120 437.2 327 70.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-119 434.1 373 60.3
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.7e-119 433.7 357 65.3
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.9e-114 416.4 350 62.9
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.8e-113 413.7 403 57.1
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-112 410.2 352 62.2
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.8e-107 392.1 196 93.9
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.1e-100 369.8 448 49.6
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-97 360.9 246 75.2
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.2e-96 357.8 267 68.9
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.5e-94 348.2 214 79.0
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.7e-93 345.9 167 98.2
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-91 340.9 183 86.9
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.6e-87 325.5 192 82.3
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.3e-86 322.8 160 95.0
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 3.6e-85 319.7 154 96.8
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 3.4e-83 313.2 158 94.9
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.3e-82 311.2 149 96.6
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 4.5e-75 286.2 456 41.2
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-70 271.6 140 93.6
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.9e-68 262.3 128 96.1
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.9e-66 256.1 161 80.7
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 6.9e-52 209.1 123 85.4
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.5e-22 111.7 68 80.9
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.0e-22 111.3 49 100.0
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 4.4e-22 110.2 55 96.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 5.7e-22 109.8 104 57.7
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.7e-22 109.8 50 96.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.1e-20 103.6 47 93.6
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-19 100.5 58 84.5
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 2.2e-18 97.8 42 97.6
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 8.5e-18 95.9 46 91.3
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.1e-16 91.3 98 56.1
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 6.1e-16 89.7 38 97.4
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 8.0e-16 89.4 63 69.8
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.3e-15 87.8 88 61.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.3e-15 87.8 44 88.6
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-15 87.4 42 92.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 1.2e-14 85.5 49 81.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.6e-14 84.3 35 100.0
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.6e-14 84.3 59 69.5


User provided reference genes

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