Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01006061001 Vitis vinifera HOM05D001008 ORTHO05D034034 2.5e-34 148.3 78 100.0
SGA_v2.0_scaffold8G04483 Striga asiatica HOM05D001008 ORTHO05D003146 1.5e-10 69.3 42 85.7
CSS0026027 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D003146 1.9e-10 68.9 35 97.1
Solyc09g018790.3 Solanum lycopersicum HOM05D001008 ORTHO05D003146 1.9e-10 68.9 35 97.1
Sopen09g012390 Solanum pennellii HOM05D001008 ORTHO05D003146 1.9e-10 68.9 35 97.1
PGSC0003DMG400020299 Solanum tuberosum HOM05D001008 ORTHO05D003146 1.9e-10 68.9 35 97.1
GSVIVG01004121001 Vitis vinifera HOM05D001008 ORTHO05D003146 1.9e-10 68.9 35 97.1
Peaxi162Scf00293g00315 Petunia axillaris HOM05D001008 ORTHO05D003146 4.3e-10 67.8 35 94.3
PGR044G1536 Punica granatum HOM05D001008 ORTHO05D003146 4.3e-10 67.8 35 94.3
Actinidia23819 Actinidia chinensis HOM05D001008 ORTHO05D003146 7.3e-10 67.0 35 94.3
Actinidia34518 Actinidia chinensis HOM05D001008 ORTHO05D003146 7.3e-10 67.0 35 94.3
CSS0005415 Camellia sinensis var. sinensis HOM05D001008 ORTHO05D003146 7.3e-10 67.0 34 97.1
Cc01_g15690 Coffea canephora HOM05D001008 ORTHO05D003146 7.3e-10 67.0 35 94.3
Dinv28771 Davidia involucrata HOM05D001008 ORTHO05D003146 7.3e-10 67.0 35 94.3
SalBow6G4157 Salvia bowleyana HOM05D001008 ORTHO05D003146 7.3e-10 67.0 35 94.3
Nitab4.5_0000539g0020 Nicotiana tabacum HOM05D001008 ORTHO05D003146 9.5e-10 66.6 35 91.4
Oeu020445.1 Olea europaea HOM05D001008 ORTHO05D003146 9.5e-10 66.6 35 94.3
Rhsim01G0245900 Rhododendron simsii HOM05D001008 ORTHO05D003146 9.5e-10 66.6 35 94.3
CAN.G3.19 Capsicum annuum HOM05D001008 ORTHO05D003146 1.2e-09 66.2 35 91.4
Lsat_1_v5_gn_5_176021 Lactuca sativa HOM05D001008 ORTHO05D003146 1.2e-09 66.2 35 91.4
vmacro14665 Vaccinium macrocarpon HOM05D001008 ORTHO05D003146 1.2e-09 66.2 35 91.4
HPP92_004506 Vanilla planifolia HOM05D001008 ORTHO05D034034 1.2e-09 66.2 36 88.9
HPP92_004550 Vanilla planifolia HOM05D001008 ORTHO05D003146 1.2e-09 66.2 36 88.9
QL01p050930 Quercus lobata HOM05D001008 ORTHO05D003146 1.6e-09 65.9 35 91.4
arahy.Tifrunner.gnm1.ann1.DF3BVG Arachis hypogaea HOM05D001008 ORTHO05D003146 2.1e-09 65.5 35 91.4
arahy.Tifrunner.gnm1.ann1.IBI25X Arachis hypogaea HOM05D001008 ORTHO05D003146 2.1e-09 65.5 35 91.4
Prupe.7G000400 Prunus persica HOM05D001008 ORTHO05D003146 2.1e-09 65.5 35 91.4
Hund02820 Selenicereus undatus HOM05D001008 ORTHO05D003146 2.1e-09 65.5 35 85.7
CiPaw.08G117700 Carya illinoinensis HOM05D001008 ORTHO05D003146 2.8e-09 65.1 35 88.6
TAR636G3137 Trochodendron aralioides HOM05D001008 ORTHO05D003146 2.8e-09 65.1 35 91.4
Ah.11g050630 Amaranthus hybridus HOM05D001008 ORTHO05D003146 3.6e-09 64.7 35 85.7
Cpa.g.sc8.10 Carica papaya HOM05D001008 ORTHO05D003146 3.6e-09 64.7 35 88.6
Haze_04510 Corylus avellana HOM05D001008 ORTHO05D003146 3.6e-09 64.7 39 84.6
DCAR_000504 Daucus carota HOM05D001008 ORTHO05D003146 3.6e-09 64.7 35 91.4
Eucgr.K02346 Eucalyptus grandis HOM05D001008 ORTHO05D003146 3.6e-09 64.7 35 91.4
Nitab4.5_0004383g0050 Nicotiana tabacum HOM05D001008 ORTHO05D003146 3.6e-09 64.7 35 88.6
Sc05g0001480 Simmondsia chinensis HOM05D001008 ORTHO05D003146 3.6e-09 64.7 35 88.6
MSTRG.21287 Avicennia marina HOM05D001008 ORTHO05D003146 4.7e-09 64.3 35 91.4
ECA248G2282 Erigeron canadensis HOM05D001008 ORTHO05D003146 4.7e-09 64.3 35 85.7
Hma1.2p1_0161F.1_g071890 Hydrangea macrophylla HOM05D001008 ORTHO05D003146 4.7e-09 64.3 35 91.4
TWI36G1238 Tripterygium wilfordii HOM05D001008 ORTHO05D003146 4.7e-09 64.3 35 85.7
TWI36G1502 Tripterygium wilfordii HOM05D001008 ORTHO05D003146 4.7e-09 64.3 35 85.7
MBI07_g22519_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D003146 6.2e-09 63.9 52 71.2
Aa31sc249G50 Aethionema arabicum HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 82.9
Migut.D00779 Erythranthe guttata HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 88.6
FvH4_3g21710 Fragaria vesca HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 88.6
FAN11G2041 Fragaria x ananassa HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 88.6
FAN21G2309 Fragaria x ananassa HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 88.6
Potri.014G197900 Populus trichocarpa HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 88.6
Sabra14G0132500 Salix brachista HOM05D001008 ORTHO05D003146 8.0e-09 63.5 35 88.6
Aqoxy2G03951 Aquilegia oxysepala HOM05D001008 ORTHO05D003146 1.0e-08 63.2 35 88.6
EL10Ac5g10563 Beta vulgaris HOM05D001008 ORTHO05D003146 1.0e-08 63.2 35 82.9
Nn1g09386 Nelumbo nucifera HOM05D001008 ORTHO05D003146 1.0e-08 63.2 35 85.7
Os02g0562700 Oryza sativa ssp. japonica HOM05D001008 ORTHO05D003146 1.0e-08 63.2 36 83.3
CARHR101870 Cardamine hirsuta HOM05D001008 ORTHO05D003146 1.4e-08 62.8 39 76.9
Ca_23569_v3 Cicer arietinum L. HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 85.7
COL.COLO4_19722 Corchorus olitorius HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 88.6
Duzib133G0613 Durio zibethinus HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 88.6
Lj1C108T10 Lonicera japonica HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 88.6
Lalb_Chr04g0254581 Lupinus albus HOM05D001008 ORTHO05D003146 1.4e-08 62.8 39 79.5
Lalb_Chr10g0100191 Lupinus albus HOM05D001008 ORTHO05D003146 1.4e-08 62.8 39 79.5
MBI07_g30870_MAGBIO Magnolia biondii HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 88.6
Medtr8g028120 Medicago truncatula HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 85.7
PSO170G3418 Papaver somniferum HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 85.7
Thecc.01G203800 Theobroma cacao HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 88.6
TPR.G5146 Trifolium pratense HOM05D001008 ORTHO05D003146 1.4e-08 62.8 35 85.7
TAR362G0354 Trochodendron aralioides HOM05D001008 ORTHO05D003146 1.4e-08 62.8 34 88.2
Ciclev10016133m.g Citrus clementina HOM05D001008 ORTHO05D003146 1.8e-08 62.4 43 72.1
HanXRQChr01g0013711 Helianthus annuus HOM05D001008 ORTHO05D003146 1.8e-08 62.4 35 82.9
Manes.13G058100 Manihot esculenta HOM05D001008 ORTHO05D003146 1.8e-08 62.4 35 88.6
Phvul.L001881 Phaseolus vulgaris HOM05D001008 ORTHO05D003146 1.8e-08 62.4 35 82.9
THA.LOC104808825 Tarenaya hassleriana HOM05D001008 ORTHO05D003146 1.8e-08 62.4 39 76.9
Zm00001eb182460 Zea mays HOM05D001008 ORTHO05D003146 1.8e-08 62.4 35 82.9
BcaB06g26687 Brassica carinata HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
BcaC06g35746 Brassica carinata HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
A07p07570 Brassica napus HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
C07p11330 Brassica napus HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
BolC7t41611H Brassica oleracea HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
BraA07t28547Z Brassica rapa HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
Duzib138G1073 Durio zibethinus HOM05D001008 ORTHO05D003146 2.3e-08 62.0 35 85.7
Gohir.A07G088600 Gossypium hirsutum HOM05D001008 ORTHO05D003146 2.3e-08 62.0 35 85.7
Mapoly0073s0076 Marchantia polymorpha HOM05D001008 ORTHO05D003146 2.3e-08 62.0 39 76.9
RcHm_v2.0_Chr3g0497571 Rosa chinensis HOM05D001008 ORTHO05D003146 2.3e-08 62.0 35 85.7
VMungo0331G2048 Vigna mungo HOM05D001008 ORTHO05D003146 2.3e-08 62.0 35 85.7
CDE02G0482 Ceratophyllum demersum HOM05D001008 ORTHO05D003146 3.1e-08 61.6 35 85.7
CDE09G1031 Ceratophyllum demersum HOM05D001008 ORTHO05D003146 3.1e-08 61.6 35 85.7
Gohir.D07G093600 Gossypium hirsutum HOM05D001008 ORTHO05D003146 3.1e-08 61.6 35 85.7
Gorai.001G100300 Gossypium raimondii HOM05D001008 ORTHO05D003146 3.1e-08 61.6 35 85.7
Lj3g0023142 Lotus japonicus HOM05D001008 ORTHO05D003146 3.1e-08 61.6 39 76.9
MD14G1000800 Malus domestica HOM05D001008 ORTHO05D003146 3.1e-08 61.6 35 85.7
Carub.0003s2585 Capsella rubella HOM05D001008 ORTHO05D003146 4.0e-08 61.2 35 80.0
AUR62028618 Chenopodium quinoa HOM05D001008 ORTHO05D003146 4.0e-08 61.2 35 82.9
unitig_60.g25719 Utricularia gibba HOM05D001008 ORTHO05D003146 4.0e-08 61.2 35 82.9
ATR0598G122 Amborella trichopoda HOM05D001008 ORTHO05D003146 5.2e-08 60.8 35 77.1
AT3G25530 Arabidopsis thaliana HOM05D001008 ORTHO05D003146 5.2e-08 60.8 39 74.4
FAN25G3638 Fragaria x ananassa HOM05D001008 ORTHO05D003146 5.2e-08 60.8 33 90.9
Sp3g22470 Schrenkiella parvula HOM05D001008 ORTHO05D003146 5.2e-08 60.8 39 74.4
AL3G41700 Arabidopsis lyrata HOM05D001008 ORTHO05D003146 8.9e-08 60.1 39 74.4
Thhalv10002631m.g Eutrema salsugineum HOM05D001008 ORTHO05D003146 8.9e-08 60.1 39 71.8
Glyma.07G059800 Glycine max HOM05D001008 ORTHO05D003146 8.9e-08 60.1 35 80.0
PSO357G0334 Papaver somniferum HOM05D001008 ORTHO05D003146 8.9e-08 60.1 35 82.9
Psat4g158760 Pisum sativum HOM05D001008 ORTHO05D003146 8.9e-08 60.1 35 82.9
AUR62008043 Chenopodium quinoa HOM05D001008 ORTHO05D003146 1.2e-07 59.7 35 80.0
Glyma.16G028700 Glycine max HOM05D001008 ORTHO05D003146 1.5e-07 59.3 35 80.0
SEGI_21904 Sequoiadendron giganteum HOM05D001008 ORTHO05D003146 1.5e-07 59.3 37 73.0
CAN.G794.5 Capsicum annuum HOM05D001008 ORTHO05D034034 2.0e-07 58.9 35 80.0
Atru.chr6.3469 Acer truncatum HOM05D001008 ORTHO05D003146 2.6e-07 58.5 35 77.1
Gohir.A11G146000 Gossypium hirsutum HOM05D001008 ORTHO05D003146 5.8e-07 57.4 35 80.0
Gohir.D11G152100 Gossypium hirsutum HOM05D001008 ORTHO05D003146 5.8e-07 57.4 35 80.0
Gorai.007G162800 Gossypium raimondii HOM05D001008 ORTHO05D003146 5.8e-07 57.4 35 80.0
PRCOL_00004451 Prasinoderma coloniale HOM05D001008 ORTHO05D003146 5.8e-07 57.4 35 74.3
Sc12g0010300 Simmondsia chinensis HOM05D001008 ORTHO05D003146 1.3e-06 56.2 38 71.1
HPP92_022909 Vanilla planifolia HOM05D001008 ORTHO05D003146 1.7e-06 55.8 47 57.4
CANSAT56G2572 Cannabis sativa HOM05D001008 ORTHO05D003146 2.2e-06 55.5 38 71.1
Ciclev10025937m.g Citrus clementina HOM05D001008 ORTHO05D003146 2.2e-06 55.5 46 65.2
Prupe.3G048100 Prunus persica HOM05D001008 ORTHO05D003146 2.2e-06 55.5 46 67.4
Cfa003573 Carpinus fangiana HOM05D001008 ORTHO05D003146 2.9e-06 55.1 33 75.8
QL05p011285 Quercus lobata HOM05D001008 ORTHO05D003146 2.9e-06 55.1 49 59.2
Hund20832 Selenicereus undatus HOM05D001008 ORTHO05D003146 2.9e-06 55.1 38 68.4
CiPaw.01G223700 Carya illinoinensis HOM05D001008 ORTHO05D003146 3.7e-06 54.7 44 63.6
Phvul.L001781 Phaseolus vulgaris HOM05D001008 ORTHO05D003146 3.7e-06 54.7 48 64.6
TWI79G1331 Tripterygium wilfordii HOM05D001008 ORTHO05D003146 3.7e-06 54.7 38 68.4
Pp3c23_12960 Physcomitrium patens HOM05D001008 ORTHO05D003146 4.9e-06 54.3 42 66.7
Potri.003G040800 Populus trichocarpa HOM05D001008 ORTHO05D003146 4.9e-06 54.3 38 68.4
Sabra03G0023600 Salix brachista HOM05D001215 ORTHO05D003146 4.9e-06 54.3 33 75.8
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 6.4e-06 53.9 33 75.8
arahy.Tifrunner.gnm1.ann1.3W58DA Arachis hypogaea HOM05D001008 ORTHO05D003146 6.4e-06 53.9 39 66.7
AUR62009841 Chenopodium quinoa HOM05D001008 ORTHO05D003146 6.4e-06 53.9 38 65.8
AUR62038153 Chenopodium quinoa HOM05D001008 ORTHO05D003146 6.4e-06 53.9 38 65.8
Cc04_g01810 Coffea canephora HOM05D001008 ORTHO05D003146 6.4e-06 53.9 38 65.8
QL05p011666 Quercus lobata HOM05D001008 ORTHO05D003146 6.4e-06 53.9 46 63.0
Zm00001eb160170 Zea mays HOM05D001008 ORTHO05D003146 6.4e-06 53.9 38 68.4
MSTRG.9501 Avicennia marina HOM05D001008 ORTHO05D003146 8.3e-06 53.5 38 68.4
CBR_g18889 Chara braunii HOM05D001008 ORTHO05D003146 8.3e-06 53.5 35 65.7
Cre11.g467617 Chlamydomonas reinhardtii HOM05D001008 ORTHO05D003146 8.3e-06 53.5 35 65.7
Migut.D00963 Erythranthe guttata HOM05D001008 ORTHO05D003146 8.3e-06 53.5 38 68.4
HanXRQChr10g0312421 Helianthus annuus HOM05D001008 ORTHO05D003146 8.3e-06 53.5 33 75.8
Os01g0574600 Oryza sativa ssp. japonica HOM05D001008 ORTHO05D003146 8.3e-06 53.5 51 60.8
PSO063G2064 Papaver somniferum HOM05D001008 ORTHO05D003146 8.3e-06 53.5 39 66.7
Sp1g15760 Schrenkiella parvula HOM05D001008 ORTHO05D003146 8.3e-06 53.5 39 66.7
SMO119G0197 Selaginella moellendorffii HOM05D001008 ORTHO05D003146 8.3e-06 53.5 35 68.6
SMO163G0080 Selaginella moellendorffii HOM05D001008 ORTHO05D003146 8.3e-06 53.5 35 68.6


User provided reference genes

Program Settings