Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.7e-150 535.8 246 100.0
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.3e-149 531.2 246 99.2
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 4.9e-121 438.0 241 80.5
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 8.7e-118 427.2 240 78.8
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 4.8e-116 421.4 243 77.4
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.4e-115 419.1 243 75.7
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 2.4e-115 419.1 242 77.7
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 3.4e-114 415.2 243 76.5
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 4.5e-114 414.8 243 75.7
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.1e-112 410.2 244 77.0
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.5e-112 409.1 243 77.0
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 4.6e-111 404.8 243 76.5
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.1e-111 404.4 244 73.8
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 7.9e-111 404.1 243 73.3
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 7.9e-111 404.1 244 74.2
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.0e-110 403.7 243 72.4
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 1.8e-110 402.9 243 74.9
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 2.3e-110 402.5 243 72.4
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.3e-110 402.5 243 72.4
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.3e-110 402.5 243 72.0
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.0e-110 402.1 243 72.0
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.0e-110 402.1 243 74.5
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 3.9e-110 401.7 243 74.5
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 5.1e-110 401.4 242 72.3
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 5.1e-110 401.4 242 72.7
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.5e-109 399.8 243 74.1
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 7.4e-109 397.5 241 72.2
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 9.7e-109 397.1 243 71.6
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.6e-108 396.4 243 74.1
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 2.2e-108 396.0 242 73.1
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 2.8e-108 395.6 243 75.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.8e-108 395.6 243 73.3
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 2.8e-108 395.6 243 73.3
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 1.4e-107 393.3 241 72.2
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 5.3e-107 391.3 243 72.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.0e-106 389.4 243 73.3
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 3.4e-106 388.7 227 77.5
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 3.4e-106 388.7 243 70.0
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 5.9e-106 387.9 249 73.5
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 7.7e-106 387.5 243 73.7
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.7e-105 386.3 243 71.2
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.1e-104 383.6 242 68.6
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 5.5e-104 381.3 243 70.4
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 7.2e-104 380.9 243 69.1
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 1.2e-103 380.2 239 69.9
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.1e-103 379.4 243 68.3
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 4.6e-103 378.3 246 69.5
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 6.1e-103 377.9 243 70.0
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 7.9e-103 377.5 235 70.2
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 1.0e-102 377.1 243 67.9
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.8e-102 376.3 240 69.2
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.0e-102 375.6 240 69.2
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 6.7e-102 374.4 240 69.6
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 6.7e-102 374.4 240 68.3
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 6.7e-102 374.4 241 69.7
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.1e-101 373.6 243 67.5
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 2.5e-101 372.5 243 66.7
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 3.3e-101 372.1 242 67.4
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 7.4e-101 370.9 243 66.7
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 2.8e-100 369.0 244 68.0
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 3.7e-100 368.6 243 66.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 3.7e-100 368.6 244 68.4
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.8e-99 366.3 239 67.4
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 2.4e-99 365.9 224 71.0
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 4.1e-99 365.2 244 69.3
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 6.9e-99 364.4 243 65.8
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.2e-98 363.6 250 66.0
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 5.9e-98 361.3 239 65.7
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 8.5e-97 357.5 244 67.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 5.5e-96 354.8 248 65.7
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 9.4e-96 354.0 243 64.2
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 9.4e-96 354.0 223 68.2
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 3.6e-95 352.1 243 63.8
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.7e-95 351.7 245 65.7
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 4.7e-95 351.7 249 65.5
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 7.9e-95 350.9 241 64.7
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 7.9e-95 350.9 232 67.7
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.0e-94 350.5 239 66.5
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 6.7e-94 347.8 244 64.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 9.7e-93 344.0 246 65.0
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 8.2e-92 340.9 243 66.7
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 1.8e-91 339.7 246 63.8
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 2.4e-91 339.3 243 65.4
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 3.1e-91 339.0 238 64.7
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 9.1e-91 337.4 243 66.3
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 3.5e-90 335.5 244 63.5
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 4.5e-90 335.1 245 61.6
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 8.5e-89 330.9 243 63.8
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 8.5e-89 330.9 243 63.8
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.5e-88 330.1 243 64.6
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.9e-88 329.7 243 63.8
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 2.5e-88 329.3 243 63.4
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 2.5e-88 329.3 243 63.4
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.5e-88 328.2 223 67.3
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.5e-88 328.2 239 61.9
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 9.4e-88 327.4 243 64.6
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.0e-86 323.9 243 63.4
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.1e-85 320.5 245 62.9
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 3.3e-85 318.9 243 60.5
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.3e-84 317.0 241 63.9
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 1.2e-82 310.5 200 70.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.3e-81 307.0 237 62.9
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 2.5e-80 302.8 239 58.6
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 4.2e-80 302.0 224 61.6
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 5.5e-80 301.6 235 60.0
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.4e-78 297.0 210 63.3
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 2.6e-77 292.7 241 56.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 2.2e-76 289.7 216 64.8
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 8.3e-76 287.7 172 74.4
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 4.1e-75 285.4 241 55.6
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 3.5e-74 282.3 176 71.0
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 4.0e-70 268.9 242 52.5
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 3.4e-69 265.8 183 62.8
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.7e-68 263.5 249 51.0
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.7e-68 263.5 243 54.3
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.4e-67 259.6 246 52.4
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 7.7e-66 254.6 184 65.2
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 1.0e-65 254.2 246 49.2
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.7e-60 235.7 171 64.3
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.3e-57 226.5 148 66.9
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.6e-55 220.3 137 72.3
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.2e-53 214.2 133 71.4
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 4.4e-53 212.2 135 68.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.9e-52 209.5 196 52.0
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 8.6e-49 198.0 207 50.7
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.5e-48 197.2 146 61.6
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 5.6e-48 195.3 244 42.6
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.9e-40 170.2 184 44.6
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.2e-39 167.5 126 63.5
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 7.8e-34 148.3 130 53.8
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 9.6e-24 114.8 159 42.1
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.3e-20 104.4 63 74.6
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 4.9e-20 102.4 72 65.3
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.1e-19 101.3 114 42.1
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.9e-19 100.5 73 64.4
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 3.2e-19 99.8 65 64.6
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-18 97.4 67 61.2
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 7.9e-18 95.1 67 61.2
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.8e-14 84.0 94 45.7
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 5.1e-09 65.9 125 33.6


User provided reference genes

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