Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 4.9e-166 587.8 312 100.0
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.5e-156 555.1 323 93.8
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.8e-150 535.0 312 93.3
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 7.4e-146 520.8 312 90.4
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 6.0e-132 474.6 312 80.8
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 8.7e-131 470.7 313 82.1
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 7.4e-130 467.6 313 82.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 3.9e-123 445.3 316 76.9
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 5.7e-122 441.4 316 76.6
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 8.5e-118 427.6 317 76.0
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 6.1e-116 421.4 312 74.0
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 1.8e-115 419.9 317 73.5
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 3.0e-115 419.1 313 71.6
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 6.7e-115 417.9 313 73.2
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 2.0e-114 416.4 320 72.2
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 2.6e-114 416.0 316 70.9
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 1.7e-113 413.3 316 72.8
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 2.2e-113 412.9 313 73.5
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 4.8e-113 411.8 310 73.2
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 4.8e-113 411.8 265 82.3
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 3.1e-112 409.1 317 71.3
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 4.1e-112 408.7 318 67.6
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 8.5e-110 401.0 313 70.9
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 8.5e-110 401.0 313 70.9
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 1.1e-109 400.6 315 71.1
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.9e-109 399.8 315 67.6
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 3.2e-109 399.1 317 69.7
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 3.2e-109 399.1 316 66.8
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 3.2e-109 399.1 314 71.7
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 6.1e-108 394.8 316 68.7
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 7.9e-108 394.4 265 78.9
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 7.9e-108 394.4 315 68.6
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.8e-107 393.3 314 66.2
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 2.3e-107 392.9 271 75.6
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 3.0e-107 392.5 298 73.2
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 2.6e-106 389.4 313 69.3
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 4.4e-106 388.7 312 70.2
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 7.4e-106 387.9 296 71.6
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 7.4e-106 387.9 316 67.4
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 6.3e-105 384.8 249 82.7
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.1e-104 382.1 321 65.4
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 7.0e-104 381.3 285 69.8
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 7.0e-104 381.3 285 69.8
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 1.2e-103 380.6 288 69.4
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 1.2e-103 380.6 270 74.1
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.2e-103 380.6 273 74.7
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.2e-103 380.6 309 67.6
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 1.2e-103 380.6 249 81.9
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.0e-103 379.8 314 70.1
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 3.5e-103 379.0 319 68.0
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 4.5e-103 378.6 316 69.0
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 1.0e-102 377.5 316 67.4
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.0e-102 377.5 315 68.6
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 1.3e-102 377.1 321 69.2
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.3e-102 377.1 314 68.8
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 2.9e-102 375.9 285 71.6
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 5.0e-102 375.2 278 72.3
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 8.5e-102 374.4 317 70.3
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.5e-101 373.6 320 66.9
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.9e-101 373.2 306 68.3
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 7.2e-101 371.3 304 64.8
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 2.7e-100 369.4 283 71.0
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 4.7e-100 368.6 265 72.8
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 4.7e-100 368.6 274 70.4
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 4.7e-100 368.6 314 66.6
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 6.1e-100 368.2 294 68.4
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 8.0e-100 367.9 309 70.6
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.4e-99 367.1 264 75.0
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 5.2e-99 365.2 247 74.9
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 5.2e-99 365.2 311 68.8
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 1.5e-98 363.6 327 64.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.0e-98 363.2 270 70.0
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 5.7e-98 361.7 269 72.5
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 9.7e-98 360.9 257 73.2
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 4.8e-97 358.6 290 68.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.4e-96 357.1 290 67.9
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 4.1e-96 355.5 398 53.3
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 2.0e-95 353.2 290 67.2
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 3.5e-95 352.4 316 64.6
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 4.5e-95 352.1 285 64.9
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 6.5e-94 348.2 306 62.4
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 5.5e-93 345.1 294 64.3
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 9.4e-93 344.4 307 66.1
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.2e-92 344.0 270 65.6
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 1.6e-92 343.6 318 60.4
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.7e-92 342.8 262 69.5
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 2.3e-91 339.7 252 68.3
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 2.3e-91 339.7 280 70.0
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 4.0e-91 339.0 271 69.4
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.0e-90 336.7 311 57.6
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 9.8e-90 334.3 225 75.6
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 8.3e-89 331.3 269 66.5
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 3.1e-88 329.3 312 61.5
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 7.7e-87 324.7 225 72.4
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 7.7e-87 324.7 225 72.4
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 8.5e-86 321.2 228 72.4
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 7.2e-85 318.2 237 73.4
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 1.2e-82 310.8 228 71.9
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 2.0e-82 310.1 249 63.9
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 9.8e-82 307.8 272 65.8
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 2.3e-78 296.6 185 81.1
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 7.5e-74 281.6 191 78.5
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 2.4e-72 276.6 293 55.6
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.6e-71 272.3 287 55.7
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.3e-70 270.8 307 54.7
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 6.6e-70 268.5 179 79.3
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 8.0e-68 261.5 261 58.6
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.1e-64 251.1 177 75.7
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 4.7e-60 235.7 253 50.6
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.7e-57 226.1 310 46.1
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 8.3e-57 224.9 251 52.2
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 5.2e-51 205.7 144 78.5
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.7e-49 200.7 192 56.2
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.4e-43 180.3 173 50.3
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.2e-39 167.9 128 64.1
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 6.2e-36 155.6 120 64.2
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 2.0e-34 150.6 104 81.7
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 1.9e-32 144.1 173 49.1
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 3.1e-27 126.7 120 58.3
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 9.0e-27 125.2 98 67.3
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 3.8e-25 119.8 238 34.0
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.5e-21 107.8 78 71.8
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 1.8e-19 100.9 101 56.4
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 9.3e-16 88.6 68 60.3
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 6.0e-15 85.9 106 50.9
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.3e-14 84.7 72 63.9
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 4.1e-11 73.2 65 64.6
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 1.5e-10 71.2 65 67.7
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 3.2e-08 63.5 35 68.6
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 2.7e-07 60.5 46 73.9
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 7.9e-07 58.9 151 34.4


User provided reference genes

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