Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.3e-188 662.9 333 100.0
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.9e-188 661.0 333 99.7
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.6e-185 650.6 333 98.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-184 649.4 333 98.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.6e-178 629.4 333 96.1
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 3.5e-178 628.2 333 95.2
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 9.2e-155 550.4 333 83.5
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.4e-150 535.8 333 82.6
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.5e-149 533.1 333 81.4
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.8e-142 509.6 333 78.1
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.3e-140 503.4 332 75.9
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 1.3e-137 493.4 335 75.2
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.9e-136 489.6 333 73.6
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.6e-135 486.5 334 74.3
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 4.8e-135 485.0 332 74.7
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.1e-134 483.8 334 73.4
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 6.9e-134 481.1 335 74.9
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.2e-133 480.3 335 73.7
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.0e-133 479.6 333 75.1
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.6e-133 479.2 333 75.1
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 3.4e-133 478.8 332 74.1
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.7e-132 476.5 336 73.8
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 6.4e-132 474.6 335 73.7
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 8.4e-132 474.2 341 74.5
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.1e-131 473.8 335 72.8
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-131 473.8 334 74.3
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.1e-131 473.8 333 73.3
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 1.4e-131 473.4 335 74.6
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.4e-131 473.4 337 73.0
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.5e-131 472.6 335 73.4
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.2e-131 471.9 335 71.9
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 5.5e-131 471.5 335 72.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.2e-130 470.3 332 73.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 4.6e-130 468.4 334 73.4
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 6.0e-130 468.0 335 72.2
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 6.0e-130 468.0 335 72.8
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.0e-129 467.2 335 71.9
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 3.0e-129 465.7 334 71.9
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.7e-129 464.5 341 70.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 6.7e-129 464.5 341 70.7
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.1e-128 463.8 336 72.3
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.5e-128 463.4 325 73.5
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 3.3e-128 462.2 335 71.3
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 3.3e-128 462.2 336 71.4
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 4.3e-128 461.8 339 71.4
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 1.3e-127 460.3 341 71.3
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 3.7e-127 458.8 335 70.1
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 8.2e-127 457.6 336 69.9
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-126 457.2 321 74.8
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.4e-126 456.8 333 71.8
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 1.8e-126 456.4 335 71.3
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 5.3e-126 454.9 343 71.1
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 5.3e-126 454.9 333 70.6
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 9.0e-126 454.1 333 70.0
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 9.0e-126 454.1 333 72.7
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.2e-125 453.8 335 70.1
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.6e-125 452.6 333 70.0
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.4e-125 452.2 336 69.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.4e-125 452.2 335 69.6
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.3e-124 450.3 338 68.6
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.5e-124 448.0 339 69.9
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 8.4e-124 447.6 331 69.5
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.2e-123 445.7 340 69.7
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 4.2e-123 445.3 340 69.7
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 2.1e-122 443.0 338 68.9
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 3.5e-122 442.2 336 69.0
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-121 440.3 331 68.9
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 3.0e-121 439.1 336 68.5
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 3.9e-121 438.7 336 69.0
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.1e-121 438.3 333 66.7
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.5e-120 436.8 333 68.8
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.3e-120 435.6 334 67.4
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.3e-119 433.7 336 67.9
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 4.8e-119 431.8 379 61.5
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.4e-118 429.5 330 68.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.4e-118 429.5 330 68.2
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 3.4e-117 425.6 333 66.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 4.5e-117 425.2 337 66.5
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 7.7e-117 424.5 326 68.4
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.7e-116 423.3 331 67.4
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-115 420.2 333 66.7
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.9e-115 419.9 341 67.2
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.9e-115 419.9 338 66.3
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.9e-115 419.9 343 65.3
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 2.5e-115 419.5 340 65.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.2e-114 417.2 338 65.7
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.8e-113 413.3 338 64.2
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.0e-113 412.5 336 65.8
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 3.0e-113 412.5 338 64.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 6.7e-113 411.4 339 64.3
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.5e-112 410.2 339 64.3
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.3e-112 409.1 341 63.6
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.3e-112 409.1 342 65.2
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 3.3e-112 409.1 340 64.4
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 7.4e-112 407.9 348 65.2
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.7e-111 406.8 342 65.2
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.2e-111 406.4 355 61.7
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 1.1e-110 404.1 341 65.7
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.5e-109 400.2 359 63.8
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.4e-107 393.7 356 60.1
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.4e-107 393.7 356 60.1
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.4e-105 387.1 335 61.2
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.8e-105 386.7 360 60.3
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 3.0e-105 386.0 334 62.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 7.2e-99 364.8 262 72.5
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.2e-98 364.0 337 59.3
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 3.6e-98 362.5 284 68.3
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 4.7e-98 362.1 353 56.1
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 4.7e-98 362.1 353 55.5
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.4e-97 360.5 344 57.6
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 4.1e-94 349.0 357 57.4
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 4.1e-94 349.0 331 58.0
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.7e-93 344.7 337 56.4
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.5e-91 338.6 360 53.3
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 6.1e-90 335.1 324 59.0
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.3e-86 322.0 329 57.4
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.5e-77 292.4 229 65.9
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-75 287.7 246 63.0
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 4.9e-71 272.3 256 58.6
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 7.0e-70 268.5 209 67.0
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.0e-69 266.9 268 59.3
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 1.0e-68 264.6 355 47.3
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.4e-62 244.2 189 67.2
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 1.3e-60 237.7 188 66.0
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 9.8e-56 221.5 381 41.2
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.4e-54 216.9 359 41.2
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 3.2e-54 216.5 354 42.4
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 6.0e-53 212.2 360 41.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 5.6e-51 205.7 217 56.2
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 8.1e-50 201.8 359 41.5
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 6.0e-45 185.7 175 54.3
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 5.1e-44 182.6 226 49.1
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 2.8e-42 176.8 364 36.0
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.6e-34 149.8 366 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.4e-32 142.9 342 34.8
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-27 127.5 117 60.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.8e-26 123.6 92 62.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 9.0e-25 118.6 92 59.8
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.7e-23 114.4 140 45.7
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 3.8e-23 113.2 353 29.7
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-22 111.7 74 73.0
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 1.4e-22 111.3 133 44.4
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 2.4e-22 110.5 145 46.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.2e-22 109.8 112 47.3
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 5.4e-22 109.4 83 63.9
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 2.3e-20 104.0 56 91.1
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 5.6e-19 99.4 98 56.1
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.1e-17 93.6 81 60.5
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 5.8e-16 89.4 78 52.6
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 7.6e-16 89.0 60 75.0
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.5e-14 84.0 341 27.6
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.0e-12 77.0 161 32.3
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 4.1e-09 66.6 42 78.6
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-07 61.2 53 49.1
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.7e-07 61.2 43 62.8


User provided reference genes

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