Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 6.7e-105 384.0 196 100.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.3e-102 374.4 192 99.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.3e-102 374.4 192 99.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-101 373.2 192 99.0
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 1.2e-101 373.2 196 96.4
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 6.3e-95 350.9 196 90.8
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 4.4e-88 328.2 197 86.8
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 3.1e-86 322.0 191 82.2
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 1.1e-83 313.5 195 80.5
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 1.9e-83 312.8 190 80.5
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 9.5e-83 310.5 193 79.3
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 1.6e-82 309.7 190 82.1
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.8e-82 308.9 194 77.8
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.8e-82 308.9 194 77.8
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.3e-81 305.8 194 78.4
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 2.3e-81 305.8 193 79.3
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 4.0e-81 305.1 190 80.0
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 5.2e-81 304.7 197 77.7
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 5.2e-81 304.7 191 79.6
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 8.9e-81 303.9 187 81.3
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 8.9e-81 303.9 193 77.7
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 8.9e-81 303.9 200 76.5
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.5e-80 303.1 193 76.2
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 2.0e-80 302.8 188 80.9
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 2.6e-80 302.4 191 78.0
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.6e-80 302.4 193 77.2
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 4.4e-80 301.6 191 77.0
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 5.8e-80 301.2 191 78.5
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.3e-79 300.1 197 77.2
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 2.2e-79 299.3 196 74.0
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 4.9e-79 298.1 193 76.7
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 6.4e-79 297.7 188 78.2
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 6.4e-79 297.7 191 77.5
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 1.1e-78 297.0 192 77.1
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.1e-78 297.0 188 77.7
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 1.1e-78 297.0 193 75.1
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.4e-78 296.6 193 77.2
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 3.2e-78 295.4 188 77.7
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 4.1e-78 295.0 190 74.2
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 4.1e-78 295.0 195 74.9
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 4.1e-78 295.0 191 76.4
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.2e-77 293.5 193 77.7
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.2e-77 293.5 200 74.5
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.2e-77 293.5 195 75.9
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 1.6e-77 293.1 193 75.1
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.6e-77 293.1 194 75.3
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 2.0e-77 292.7 193 75.6
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 2.0e-77 292.7 190 76.8
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 3.5e-77 292.0 193 77.2
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 3.5e-77 292.0 188 77.1
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 4.6e-77 291.6 188 76.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 7.8e-77 290.8 202 72.8
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 7.8e-77 290.8 190 75.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.0e-76 290.4 192 81.8
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 1.3e-76 290.0 192 74.0
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 1.3e-76 290.0 192 75.0
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.3e-76 289.3 190 75.8
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.3e-76 289.3 190 75.8
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 2.3e-76 289.3 188 75.5
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 3.9e-76 288.5 192 76.0
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 5.0e-76 288.1 190 74.7
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 6.6e-76 287.7 192 72.9
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 8.6e-76 287.3 196 75.5
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 1.5e-75 286.6 220 68.2
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 2.5e-75 285.8 189 75.1
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.5e-75 285.8 199 74.4
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 2.5e-75 285.8 193 71.0
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 3.3e-75 285.4 249 61.0
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 4.3e-75 285.0 190 74.2
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 5.6e-75 284.6 246 61.8
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 9.5e-75 283.9 177 79.7
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.2e-74 283.5 190 74.2
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 2.1e-74 282.7 189 74.6
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 3.6e-74 282.0 189 74.6
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 6.2e-74 281.2 192 73.4
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 6.2e-74 281.2 190 74.7
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.1e-73 280.4 187 77.0
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.4e-73 280.0 189 73.5
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 5.2e-73 278.1 186 75.3
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.5e-72 276.6 182 74.7
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 4.4e-72 275.0 188 72.3
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 9.8e-72 273.9 190 71.1
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 8.3e-71 270.8 199 69.8
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 8.3e-71 270.8 192 72.9
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 9.2e-70 267.3 204 68.6
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.7e-69 265.8 162 79.0
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 3.5e-69 265.4 192 71.9
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 1.0e-68 263.8 188 72.3
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 3.1e-65 252.3 185 65.9
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 6.4e-63 244.6 164 72.0
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 1.3e-60 236.9 190 62.1
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 1.7e-60 236.5 189 64.0
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 7.3e-59 231.1 185 62.2
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 5.8e-56 221.5 149 73.8
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 9.9e-56 220.7 163 68.1
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 1.3e-55 220.3 137 77.4
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 6.4e-55 218.0 191 61.8
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.6e-53 213.4 190 59.5
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 1.2e-48 197.2 130 75.4
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 2.6e-48 196.1 258 49.2
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 9.3e-46 187.6 138 68.1
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 1.6e-45 186.8 121 78.5
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 6.0e-45 184.9 109 84.4
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 3.0e-44 182.6 141 66.7
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 2.5e-43 179.5 113 77.0
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 2.8e-42 176.0 109 80.7
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 8.4e-39 164.5 187 47.1
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 8.4e-39 164.5 115 69.6
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.8e-36 156.8 199 46.2
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 2.5e-35 152.9 106 73.6
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 5.6e-35 151.8 141 58.9
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 2.8e-34 149.4 86 82.6
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 2.2e-31 139.8 102 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 6.4e-31 138.3 134 53.0
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 4.6e-29 132.1 140 59.3
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.9e-22 110.2 132 48.5
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 4.3e-19 99.0 62 79.0
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 1.4e-17 94.0 197 33.0
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 4.1e-17 92.4 79 55.7
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 4.2e-14 82.4 52 75.0
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 7.2e-14 81.6 78 51.3
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 2.2e-10 70.1 51 64.7
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.8e-09 67.0 109 40.4
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 7.2e-06 55.1 50 54.0


User provided reference genes

Program Settings