Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 8.7e-215 750.0 363 100.0
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.1e-212 743.0 363 98.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.3e-206 721.1 368 95.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.4e-203 711.4 367 95.1
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.6e-176 621.3 355 85.4
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.8e-170 601.7 356 83.1
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 4.2e-161 571.6 361 76.7
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.4e-159 566.6 357 76.2
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-151 540.0 297 87.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 6.3e-149 531.2 359 71.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 8.3e-149 530.8 351 73.8
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.4e-148 530.0 357 71.4
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.0e-143 513.8 354 67.8
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.0e-143 512.3 361 68.4
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 4.4e-142 508.4 355 68.5
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 7.5e-142 507.7 356 68.8
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.3e-141 506.9 368 68.5
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 2.2e-141 506.1 350 71.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.8e-140 503.1 355 70.1
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 3.1e-140 502.3 360 69.4
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 5.4e-140 501.5 357 67.5
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 5.9e-139 498.0 358 67.9
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 3.8e-138 495.4 357 68.3
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.9e-137 493.0 360 66.9
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 9.5e-137 490.7 360 67.5
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.2e-136 490.3 357 66.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.6e-136 490.0 355 67.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.6e-136 490.0 356 65.2
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 4.7e-136 488.4 356 65.4
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.1e-136 488.0 355 67.3
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.4e-135 486.9 357 65.8
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.3e-135 486.1 350 66.6
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 8.9e-135 484.2 359 65.7
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.5e-134 483.4 352 67.3
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 9.8e-134 480.7 350 65.7
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.3e-133 480.3 352 67.9
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.9e-133 479.2 354 65.8
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 4.9e-133 478.4 325 70.2
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 4.9e-133 478.4 357 65.5
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 6.4e-133 478.0 348 65.2
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.1e-132 477.2 356 65.7
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.4e-132 476.9 357 66.1
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 4.1e-132 475.3 355 64.8
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 5.4e-132 474.9 373 60.1
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 9.2e-132 474.2 352 65.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.2e-131 473.8 354 65.5
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.0e-130 470.7 351 61.8
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 5.0e-130 468.4 357 65.0
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 5.0e-130 468.4 356 63.5
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 8.6e-130 467.6 361 63.4
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.1e-129 467.2 356 63.5
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.1e-129 467.2 357 62.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.5e-129 466.8 355 62.8
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.3e-129 464.5 346 63.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 7.3e-129 464.5 346 63.3
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 9.5e-129 464.2 349 64.5
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 9.5e-129 464.2 482 52.1
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 3.6e-128 462.2 356 62.1
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 4.7e-128 461.8 350 62.9
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 4.7e-128 461.8 355 64.8
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.8e-127 459.9 354 63.8
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 5.2e-127 458.4 363 62.3
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 8.9e-127 457.6 356 61.0
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 8.9e-127 457.6 354 60.7
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.0e-126 456.4 356 60.7
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 2.0e-126 456.4 360 63.9
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 3.4e-126 455.7 363 61.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 9.8e-126 454.1 357 61.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.3e-125 453.8 355 62.0
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.3e-125 453.8 360 63.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.9e-125 452.6 355 63.1
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.9e-125 452.6 404 54.5
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.7e-125 452.2 353 60.6
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.2e-124 449.1 356 59.8
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 3.2e-124 449.1 428 54.7
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.4e-124 448.4 354 62.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 5.4e-124 448.4 327 66.7
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-123 447.2 355 61.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.2e-123 447.2 355 61.1
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.2e-123 447.2 357 59.9
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 2.1e-123 446.4 354 61.0
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.7e-123 446.0 355 60.6
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 4.6e-123 445.3 426 53.8
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.3e-122 443.0 355 61.1
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 1.5e-121 440.3 356 59.8
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 4.3e-121 438.7 356 59.3
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 4.3e-121 438.7 355 60.6
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.5e-121 437.6 361 60.1
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 9.5e-121 437.6 347 61.1
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.2e-120 437.2 356 60.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.6e-120 436.8 356 60.7
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.0e-114 417.5 400 54.0
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.1e-114 415.2 351 57.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.2e-112 410.6 358 58.9
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.1e-111 407.5 301 64.8
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.3e-109 400.6 341 56.9
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 5.4e-108 395.2 357 57.4
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.1e-106 388.7 356 54.2
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.1e-105 387.5 237 75.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 7.3e-105 384.8 355 56.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.6e-102 376.3 385 49.1
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.7e-101 373.6 357 51.8
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.9e-100 370.2 355 56.3
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 5.1e-98 362.1 352 53.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.6e-96 355.9 251 69.3
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 9.0e-95 351.3 328 55.8
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.1e-91 340.1 209 77.5
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 6.7e-90 335.1 436 42.2
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 3.3e-89 332.8 296 57.1
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 5.8e-86 322.0 282 57.8
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 3.5e-83 312.8 355 48.7
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.4e-79 300.1 207 67.6
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.5e-78 297.4 407 39.8
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.4e-78 296.2 398 40.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.2e-76 289.3 158 80.4
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.5e-76 288.9 354 42.9
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 4.1e-71 272.7 224 64.3
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.5e-62 244.2 133 82.7
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 7.7e-62 241.9 126 83.3
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.1e-55 221.5 250 47.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.1e-55 221.5 250 47.6
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.5e-44 183.7 177 53.7
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 2.7e-43 180.3 200 48.0
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 4.7e-43 179.5 200 48.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 7.5e-41 172.2 131 55.7
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 2.2e-40 170.6 206 48.5
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 1.1e-39 168.3 146 58.2
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 3.3e-28 130.2 76 80.3
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 5.2e-26 122.9 115 59.1
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.7e-21 107.8 131 45.8
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.5e-20 104.8 122 48.4
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.6e-20 102.8 229 30.1
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 8.0e-11 72.4 94 44.7


User provided reference genes

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