Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 1.7e-275 952.2 547 100.0
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 7.3e-274 946.8 547 99.6
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.9e-269 932.2 547 98.4
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.2e-265 919.5 547 97.8
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 4.9e-254 880.9 547 94.1
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 1.3e-219 766.5 554 82.5
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 3.3e-218 761.9 552 76.3
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 9.0e-216 753.8 552 75.7
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 5.9e-191 671.4 545 70.1
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 5.9e-191 671.4 545 67.5
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 7.7e-191 671.0 547 66.9
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 6.5e-190 667.9 547 67.3
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 2.5e-189 666.0 546 67.0
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 2.5e-189 666.0 547 66.4
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 1.4e-187 660.2 542 68.5
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.6e-186 656.0 545 66.6
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 9.1e-184 647.5 547 73.1
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 1.2e-183 647.1 544 66.4
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 3.5e-183 645.6 547 72.6
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 3.5e-183 645.6 547 72.4
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 4.5e-183 645.2 547 72.4
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 3.8e-182 642.1 547 72.0
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 5.0e-182 641.7 546 70.0
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 5.0e-182 641.7 546 70.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 5.0e-182 641.7 545 69.4
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 2.1e-180 636.3 549 71.0
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 1.4e-179 633.6 548 71.5
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 4.0e-179 632.1 549 71.4
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 4.0e-179 632.1 549 71.6
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 6.8e-179 631.3 549 71.4
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 1.5e-178 630.2 549 70.9
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 9.8e-178 627.5 545 62.6
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 9.8e-178 627.5 545 62.2
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.7e-177 626.7 535 64.9
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 1.7e-177 626.7 535 64.9
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 2.2e-177 626.3 548 70.4
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 4.9e-177 625.2 543 71.8
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 4.9e-177 625.2 542 63.3
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.1e-176 622.5 533 64.4
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 6.6e-174 614.8 545 61.8
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 1.2e-172 610.5 548 62.6
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 3.6e-172 609.0 540 61.5
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 3.6e-172 609.0 540 61.5
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 6.8e-171 604.7 552 60.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 1.3e-169 600.5 548 60.4
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.9e-169 599.4 542 63.8
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 4.9e-169 598.6 544 66.4
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 6.4e-169 598.2 553 68.0
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.1e-168 597.4 552 62.1
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.8e-168 596.7 552 62.0
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 1.2e-167 594.0 548 62.8
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 2.0e-167 593.2 557 60.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.7e-166 590.1 547 58.7
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 6.6e-166 588.2 552 61.8
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 8.6e-166 587.8 553 58.2
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 5.6e-165 585.1 542 58.5
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 1.2e-162 577.4 543 58.0
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 2.6e-162 576.2 540 66.3
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 2.9e-161 572.8 546 59.2
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 1.9e-160 570.1 543 57.3
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 2.4e-160 569.7 537 67.2
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.2e-159 567.4 542 58.9
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.6e-159 567.0 550 65.6
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 4.6e-159 565.5 543 56.7
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 3.0e-158 562.8 549 55.6
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 6.6e-158 561.6 500 59.2
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 8.6e-158 561.2 552 64.5
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.6e-156 555.8 550 64.4
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 4.7e-156 555.4 541 56.0
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 4.7e-156 555.4 544 55.1
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.4e-155 553.9 512 67.2
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 1.8e-155 553.5 548 58.8
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 8.9e-155 551.2 550 63.8
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.2e-154 550.8 541 58.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.0e-154 550.1 547 63.6
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 3.4e-154 549.3 541 55.5
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 4.4e-154 548.9 545 62.6
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.7e-153 547.0 543 55.1
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.2e-153 546.6 547 63.3
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.9e-149 533.5 549 62.7
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 2.5e-149 533.1 543 54.1
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 9.5e-149 531.2 543 53.8
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 2.8e-148 529.6 541 62.7
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.8e-147 526.9 550 53.1
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 8.9e-147 524.6 541 53.4
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 2.2e-145 520.0 542 53.5
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 3.8e-145 519.2 543 53.4
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.4e-144 515.4 554 53.6
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.8e-143 511.5 541 62.1
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.7e-142 510.4 554 52.5
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 2.3e-142 510.0 551 61.7
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 7.3e-141 505.0 544 60.7
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 2.1e-140 503.4 544 60.7
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 6.2e-140 501.9 551 52.1
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 2.4e-139 500.0 542 53.7
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 2.1e-135 486.9 548 58.6
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 6.0e-135 485.3 520 60.4
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.7e-134 483.8 549 48.5
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 2.2e-129 466.8 549 59.9
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 1.1e-128 464.5 554 50.0
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 8.1e-124 448.4 339 68.4
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.8e-123 447.2 540 48.3
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.2e-122 444.5 534 49.6
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 3.1e-115 419.9 540 46.1
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 8.7e-110 401.7 537 44.9
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 3.8e-105 386.3 554 43.1
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 4.5e-98 362.8 557 40.9
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.9e-94 349.7 400 61.0
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 3.4e-90 336.7 547 50.5
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 4.4e-77 293.1 537 41.7
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 7.5e-77 292.4 536 37.1
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.7e-76 290.0 292 53.4
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 3.1e-75 287.0 531 42.6
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 1.1e-72 278.5 425 42.4
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 3.5e-66 256.9 349 41.3
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 7.7e-66 255.8 524 34.0
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 9.8e-61 238.8 319 45.5
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 2.2e-44 184.5 530 27.7
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.9e-43 181.4 246 47.2
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 1.6e-42 178.3 420 28.8
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 8.1e-39 166.0 100 77.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.2e-37 162.2 319 36.1
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 3.1e-30 137.5 237 42.2
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 1.9e-27 128.3 112 55.4
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.3e-25 122.1 102 63.7
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 5.1e-25 120.2 180 40.0
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 7.3e-24 116.3 539 26.3
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.1e-22 112.5 119 53.8
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 8.7e-17 92.8 157 43.3
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 5.6e-16 90.1 145 40.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 3.6e-15 87.4 157 41.4
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.2e-13 82.4 60 63.3
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.5e-13 82.0 71 63.4
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 2.2e-12 78.2 50 72.0
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 2.3e-09 68.2 98 43.9
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 9.6e-08 62.8 70 44.3
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 1.6e-07 62.0 101 40.6
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 2.4e-06 58.2 97 38.1


User provided reference genes

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