Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g21160 Fragaria vesca HOM05D002708 ORTHO05D016265 2.0e-121 439.1 222 100.0
FAN18G1042 Fragaria x ananassa HOM05D002708 ORTHO05D016265 2.6e-121 438.7 222 99.5
FAN13G0591 Fragaria x ananassa HOM05D002708 ORTHO05D016265 3.3e-116 421.8 222 95.9
FAN04G2890 Fragaria x ananassa HOM05D002708 ORTHO05D016265 1.3e-112 409.8 260 83.1
RcHm_v2.0_Chr7g0208291 Rosa chinensis HOM05D002708 ORTHO05D016265 5.3e-106 387.9 222 86.5
Prupe.5G046800 Prunus persica HOM05D002708 ORTHO05D016265 6.2e-46 188.3 173 58.4
MD06G1040600 Malus domestica HOM05D002708 ORTHO05D016265 1.2e-41 174.1 191 51.8
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 2.2e-27 126.7 170 41.8
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 1.9e-26 123.6 154 44.8
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 2.4e-26 123.2 154 44.2
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 3.2e-26 122.9 154 44.2
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 3.2e-26 122.9 163 41.1
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 9.2e-26 121.3 153 42.5
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.6e-25 120.6 154 43.5
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 1.6e-25 120.6 150 44.0
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 1.6e-25 120.6 154 41.6
Atru.chr3.3419 Acer truncatum HOM05D002708 ORTHO05D003516 3.5e-25 119.4 153 43.1
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 3.5e-25 119.4 163 41.1
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 3.5e-25 119.4 186 40.3
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 6.0e-25 118.6 153 42.5
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 7.8e-25 118.2 153 42.5
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 7.8e-25 118.2 163 40.5
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 7.8e-25 118.2 163 40.5
TAR375G0649 Trochodendron aralioides HOM05D002708 ORTHO05D016265 7.8e-25 118.2 153 41.8
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 1.0e-24 117.9 153 42.5
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 1.3e-24 117.5 154 42.2
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 1.7e-24 117.1 153 42.5
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 1.7e-24 117.1 149 43.0
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 3.0e-24 116.3 154 40.9
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 3.0e-24 116.3 157 39.5
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 3.0e-24 116.3 153 40.5
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 5.1e-24 115.5 168 37.5
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 5.1e-24 115.5 163 39.9
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 6.6e-24 115.2 153 40.5
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 6.6e-24 115.2 165 40.6
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 6.6e-24 115.2 155 43.9
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 8.6e-24 114.8 163 39.9
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 8.6e-24 114.8 165 40.0
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 8.6e-24 114.8 154 40.9
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 8.6e-24 114.8 154 42.2
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 8.6e-24 114.8 153 41.8
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.1e-23 114.4 155 43.2
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 1.1e-23 114.4 161 40.4
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 1.5e-23 114.0 154 44.2
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 1.5e-23 114.0 147 43.5
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 1.5e-23 114.0 154 40.3
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.9e-23 113.6 154 39.0
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.9e-23 113.6 163 39.3
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 1.9e-23 113.6 169 39.6
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 1.9e-23 113.6 165 38.8
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.5e-23 113.2 168 41.7
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.5e-23 113.2 168 41.7
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 2.5e-23 113.2 168 41.7
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 2.5e-23 113.2 154 39.0
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 3.3e-23 112.8 154 41.6
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 4.3e-23 112.5 168 36.9
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 4.3e-23 112.5 165 40.0
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 4.3e-23 112.5 158 39.9
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 5.6e-23 112.1 157 41.4
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 5.6e-23 112.1 149 39.6
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 7.3e-23 111.7 165 39.4
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 7.3e-23 111.7 149 40.9
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 7.3e-23 111.7 153 39.2
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 7.3e-23 111.7 159 38.4
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 9.6e-23 111.3 153 41.2
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 9.6e-23 111.3 151 41.7
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 1.2e-22 110.9 150 43.3
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 1.6e-22 110.5 173 37.6
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.1e-22 110.2 153 37.3
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 2.1e-22 110.2 159 40.9
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.8e-22 109.8 153 37.9
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 2.8e-22 109.8 146 39.7
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 3.6e-22 109.4 161 37.3
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 4.7e-22 109.0 149 39.6
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 4.7e-22 109.0 150 41.3
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 4.7e-22 109.0 150 42.7
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 4.7e-22 109.0 153 39.2
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 4.7e-22 109.0 204 32.8
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 6.2e-22 108.6 153 37.9
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 6.2e-22 108.6 144 41.7
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 6.2e-22 108.6 150 41.3
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 6.2e-22 108.6 161 37.3
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 8.1e-22 108.2 153 38.6
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 1.1e-21 107.8 148 39.2
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.1e-21 107.8 153 39.2
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.1e-21 107.8 148 42.6
Haze_08297 Corylus avellana HOM05D002708 ORTHO05D016265 1.1e-21 107.8 154 40.3
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.4e-21 107.5 138 40.6
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 1.4e-21 107.5 131 44.3
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 1.4e-21 107.5 158 38.6
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.4e-21 106.7 158 39.2
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 2.4e-21 106.7 158 35.4
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.1e-21 106.3 148 39.9
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 3.1e-21 106.3 148 39.9
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 3.1e-21 106.3 143 39.9
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 3.1e-21 106.3 143 39.9
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 3.1e-21 106.3 158 41.1
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.1e-21 106.3 158 41.1
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 3.1e-21 106.3 161 36.6
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 3.1e-21 106.3 150 40.0
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 3.1e-21 106.3 146 38.4
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 3.1e-21 106.3 158 35.4
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 4.0e-21 105.9 149 38.9
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 4.0e-21 105.9 143 39.9
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 4.0e-21 105.9 150 42.0
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 4.0e-21 105.9 157 40.1
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 5.2e-21 105.5 146 39.7
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 6.9e-21 105.1 144 41.7
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 8.9e-21 104.8 162 37.0
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 1.2e-20 104.4 144 41.7
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 1.2e-20 104.4 158 38.0
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.5e-20 104.0 150 40.7
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 1.5e-20 104.0 132 40.2
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 1.5e-20 104.0 148 40.5
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.0e-20 103.6 144 39.6
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 2.0e-20 103.6 143 39.2
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 2.6e-20 103.2 143 38.5
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 2.6e-20 103.2 144 41.0
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 2.6e-20 103.2 144 41.0
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 2.6e-20 103.2 144 41.0
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.6e-20 103.2 157 41.4
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 3.4e-20 102.8 148 39.2
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 3.4e-20 102.8 144 41.0
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 3.4e-20 102.8 147 37.4
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 5.8e-20 102.1 211 33.2
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 9.9e-20 101.3 150 36.0
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 9.9e-20 101.3 164 38.4
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 9.9e-20 101.3 153 35.3
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 1.3e-19 100.9 144 38.9
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 1.3e-19 100.9 120 45.0
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 1.7e-19 100.5 155 35.5
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 4.9e-19 99.0 207 31.9
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 6.4e-19 98.6 143 38.5
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 6.4e-19 98.6 177 34.5
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 8.4e-19 98.2 150 35.3
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 2.4e-18 96.7 116 44.0
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 4.2e-18 95.9 155 36.1
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 9.3e-18 94.7 120 40.8
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 2.1e-17 93.6 145 37.2
RcHm_v2.0_Chr1g0379241 Rosa chinensis HOM05D002708 ORTHO05D016265 2.7e-17 93.2 56 83.9
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 3.5e-17 92.8 166 34.3
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 3.5e-17 92.8 119 42.9
unitig_0.g1326 Utricularia gibba HOM05D002708 ORTHO05D003516 3.5e-17 92.8 148 35.1
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 4.6e-17 92.4 118 42.4
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 6.0e-17 92.0 112 42.0
TPR.G27979 Trifolium pratense HOM05D002708 ORTHO05D003516 1.3e-16 90.9 115 39.1
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.3e-16 90.9 148 35.1
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 1.7e-16 90.5 140 40.7
RcHm_v2.0_Chr7g0235341 Rosa chinensis HOM05D002708 ORTHO05D016265 3.0e-16 89.7 64 76.6
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.9e-15 87.0 106 40.6
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.5e-15 86.7 91 50.5
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 4.3e-15 85.9 141 36.9
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 2.8e-14 83.2 106 38.7
Glyma.04G057632 Glycine max HOM05D002708 ORTHO05D003516 3.6e-14 82.8 87 43.7
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 6.2e-14 82.0 139 36.0
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 2.4e-13 80.1 145 34.5
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 3.1e-13 79.7 184 32.6
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 5.3e-13 79.0 147 33.3
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 5.8e-12 75.5 168 35.1
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.3e-11 74.3 164 32.3
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 2.2e-11 73.6 150 34.0
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 6.4e-11 72.0 157 32.5
SEGI_35485 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 6.4e-11 72.0 63 49.2
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-09 67.0 169 27.8
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.7e-09 66.6 153 31.4
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 2.3e-08 63.5 98 36.7
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 3.3e-07 59.7 101 31.7
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 1.6e-06 57.4 128 31.2
SGA_v2.0_scaffold90G27667 Striga asiatica HOM05D002708 ORTHO05D003516 2.1e-06 57.0 87 37.9


User provided reference genes

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