Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 1.9e-89 332.4 164 100.0
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.8e-88 327.8 161 99.4
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 2.4e-87 325.5 161 98.8
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 3.1e-87 325.1 161 98.8
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 2.2e-85 318.9 161 96.3
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 1.8e-82 309.3 161 90.7
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 6.7e-82 307.4 161 91.3
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.3e-80 303.1 161 88.8
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.7e-80 302.8 161 89.4
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 2.2e-80 302.4 161 91.3
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 4.8e-80 301.2 161 88.2
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.2e-80 300.4 161 87.6
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 8.2e-80 300.4 161 87.6
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 8.2e-80 300.4 161 87.6
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 1.1e-79 300.1 161 88.8
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.4e-79 299.7 161 88.2
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.8e-79 299.3 161 88.8
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 2.4e-79 298.9 161 90.1
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.4e-79 298.9 161 87.6
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.3e-79 297.7 161 85.7
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 5.3e-79 297.7 161 88.2
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 6.9e-79 297.4 161 89.4
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 9.1e-79 297.0 161 87.0
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 9.1e-79 297.0 161 88.8
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 9.1e-79 297.0 161 87.6
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.5e-78 296.2 163 86.5
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 4.5e-78 294.7 161 87.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 4.5e-78 294.7 163 85.9
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 5.9e-78 294.3 161 87.0
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 7.7e-78 293.9 161 88.2
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.0e-77 293.5 167 86.8
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 1.3e-77 293.1 161 86.3
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.3e-77 293.1 161 87.0
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 1.7e-77 292.7 161 85.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.7e-77 292.7 161 86.3
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 2.2e-77 292.4 161 85.7
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.2e-77 292.4 161 83.9
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 3.8e-77 291.6 161 86.3
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 8.5e-77 290.4 161 86.3
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.1e-76 290.0 161 86.3
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 1.1e-76 290.0 163 83.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 1.1e-76 290.0 161 85.1
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.1e-76 290.0 161 85.7
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.4e-76 289.7 161 85.1
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 1.9e-76 289.3 161 85.1
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 3.2e-76 288.5 161 85.7
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 3.2e-76 288.5 161 85.7
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.2e-75 286.6 161 83.9
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.2e-75 286.6 161 85.1
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 1.2e-75 286.6 161 85.1
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 1.2e-75 286.6 161 83.9
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 1.6e-75 286.2 161 83.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 83.9
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 83.9
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 83.9
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 83.2
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 83.9
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 85.1
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 2.1e-75 285.8 161 83.9
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 2.7e-75 285.4 161 86.3
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 3.6e-75 285.0 161 83.2
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 3.6e-75 285.0 161 83.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 4.7e-75 284.6 161 83.2
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 6.1e-75 284.3 161 85.1
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 6.1e-75 284.3 161 82.6
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 8.0e-75 283.9 161 83.9
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.0e-74 283.5 161 85.1
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 1.4e-74 283.1 161 83.9
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 1.4e-74 283.1 161 83.9
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 1.4e-74 283.1 161 83.9
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.8e-74 282.7 161 80.7
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 2.3e-74 282.3 161 82.6
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 3.9e-74 281.6 161 83.2
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 3.9e-74 281.6 161 83.2
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 5.2e-74 281.2 163 82.2
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 5.2e-74 281.2 160 84.4
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.1e-73 280.0 161 82.6
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 2.0e-73 279.3 161 82.6
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 2.6e-73 278.9 161 82.0
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.3e-73 278.5 161 82.0
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 9.7e-73 276.9 161 82.6
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.7e-72 276.2 160 81.9
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 2.8e-72 275.4 161 82.0
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 3.7e-72 275.0 177 78.0
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 4.8e-72 274.6 181 74.6
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.1e-71 273.5 181 75.1
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.1e-71 273.5 181 75.1
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 2.4e-71 272.3 202 68.8
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.6e-70 268.9 192 70.8
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 4.5e-70 268.1 155 82.6
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 8.5e-69 263.8 177 74.0
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 1.1e-68 263.5 145 84.8
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 7.2e-68 260.8 159 76.1
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 7.2e-68 260.8 161 75.2
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 7.2e-68 260.8 161 78.9
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.2e-67 260.0 161 78.9
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.6e-67 259.6 163 74.8
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 3.6e-67 258.5 160 73.1
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.7e-67 258.1 161 75.2
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 4.7e-67 258.1 161 72.0
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 6.1e-67 257.7 160 73.1
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 2.0e-65 252.7 161 78.3
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.2e-64 249.2 141 83.0
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 2.8e-64 248.8 264 52.7
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 3.6e-59 231.9 241 54.8
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 5.2e-58 228.0 120 90.0
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 6.8e-58 227.6 120 88.3
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 2.6e-57 225.7 250 52.4
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.8e-56 222.2 120 85.8
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.9e-53 212.2 129 77.5
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 3.8e-45 185.3 143 61.5
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 1.3e-40 170.2 158 53.2
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.7e-40 169.9 99 79.8
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.9e-40 169.1 93 87.1
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 1.2e-38 163.7 101 77.2
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.0e-37 160.6 159 52.2
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.9e-36 156.4 91 84.6
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 7.3e-36 154.5 90 82.2
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 9.5e-36 154.1 90 84.4
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.8e-35 152.5 179 44.1
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 8.3e-32 141.0 73 89.0
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.1e-31 140.6 76 84.2
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.4e-31 140.2 71 90.1
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 2.4e-31 139.4 88 78.4
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 2.4e-31 139.4 88 78.4
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 5.4e-31 138.3 89 69.7
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 9.2e-31 137.5 81 82.7
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.6e-30 136.7 81 79.0
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 2.7e-30 136.0 73 86.3
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 2.7e-30 136.0 73 86.3
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 2.7e-30 136.0 73 86.3
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 2.3e-29 132.9 81 76.5
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 2.8e-27 125.9 64 89.1
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.8e-18 94.7 59 76.3
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.3e-13 79.7 55 70.9
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.1e-13 78.6 84 51.2
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 9.6e-12 74.3 40 87.5
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.5e-09 67.0 56 58.9
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.5e-09 67.0 41 73.2
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 9.9e-09 64.3 49 61.2
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 9.9e-09 64.3 49 61.2
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.1e-06 56.6 31 87.1


User provided reference genes

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