Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1155.6 568 100.0
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1154.4 568 99.8
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1154.4 568 99.8
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1152.1 568 99.5
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1148.3 566 99.5
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1137.1 566 98.6
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1109.4 566 95.8
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 566 95.1
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1100.1 566 95.2
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1098.2 566 95.1
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 568 94.5
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 566 94.7
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 568 94.4
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 562 94.3
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 566 94.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 566 94.2
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 568 93.8
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 553 95.3
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 562 94.3
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 566 94.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 566 94.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1087.8 566 93.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 568 93.7
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1086.6 562 94.1
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 566 93.1
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 568 93.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 562 93.8
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 566 93.5
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 566 93.6
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 566 93.3
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 566 92.9
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 568 93.1
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 568 93.5
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 559 94.3
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 567 92.8
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1082.4 564 93.4
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 566 93.1
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 566 92.9
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 559 93.9
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 568 93.0
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 563 92.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 598 89.1
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 7.8e-312 1073.2 566 92.6
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 7.8e-312 1072.8 566 92.6
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 1.6e-311 1072.0 566 91.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.6e-311 1072.0 560 93.6
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 566 92.0
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 585 90.1
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 566 91.7
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 566 92.9
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 566 91.7
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 7.8e-311 1069.7 566 92.0
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 563 91.8
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 566 91.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 566 91.3
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 566 91.9
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 566 92.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.7e-310 1068.5 553 93.5
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 2.3e-310 1068.1 566 91.3
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.3e-310 1068.1 566 91.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.3e-310 1068.1 566 91.5
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.3e-310 1068.1 563 92.2
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.0e-310 1067.8 566 92.4
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 566 91.5
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 5.0e-310 1067.0 604 88.2
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 566 91.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 9.5e-309 1062.8 566 90.8
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 9.5e-309 1062.8 566 90.8
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 560 91.8
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 2.8e-308 1061.2 566 91.0
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 566 91.5
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 3.6e-308 1060.8 566 91.3
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 8.0e-308 1059.7 566 91.7
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.0e-307 1059.3 553 91.3
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 566 91.3
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 566 91.0
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.0e-306 1055.0 623 84.8
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 9.8e-306 1052.7 566 90.1
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 3.7e-305 1050.8 566 90.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 4.9e-305 1050.4 569 90.2
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.8e-304 1048.5 552 92.4
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.8e-304 1048.5 566 90.1
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 5.4e-304 1047.0 562 89.7
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 8.6e-302 1039.6 555 91.5
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 554 88.8
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 566 89.4
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.8e-299 1031.9 596 86.1
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.7e-297 1025.4 521 94.8
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.4e-296 1022.3 574 88.2
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.4e-296 1020.4 568 89.4
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 553 88.2
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-295 1018.8 553 88.2
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.5e-295 1017.7 562 87.4
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.4e-291 1005.7 542 88.0
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.5e-285 984.9 521 91.4
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 6.8e-275 950.3 487 93.0
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.2e-273 945.3 496 92.7
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 4.9e-265 917.5 566 81.6
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 4.2e-264 914.4 454 95.8
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 5.4e-264 914.1 540 80.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.2e-250 869.8 543 78.3
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 4.2e-240 834.7 536 80.8
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.1e-238 827.8 566 75.3
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 5.9e-234 814.3 406 95.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.0e-233 811.2 568 75.2
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 7.9e-231 803.9 420 94.0
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 3.8e-225 785.0 521 77.2
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 9.4e-224 780.4 521 76.8
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.0e-222 776.9 566 71.9
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-222 776.5 502 76.1
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.2e-218 763.5 561 71.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.5e-216 755.7 566 71.9
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.8e-211 739.6 393 91.9
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.5e-210 734.9 551 68.8
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.7e-194 682.6 515 69.5
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.2e-189 667.2 329 96.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.5e-168 597.0 312 90.1
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 6.8e-158 561.6 502 61.8
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.2e-146 524.2 262 95.0
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.2e-146 524.2 547 55.6
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-138 497.7 462 58.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.7e-132 477.2 304 79.9
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.8e-129 467.2 567 50.6
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.1e-129 465.7 517 52.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 5.1e-129 465.7 385 65.5
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.3e-128 462.6 255 88.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.6e-127 460.7 293 78.8
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.3e-123 444.9 499 50.5
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.4e-118 431.0 566 47.3
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 1.2e-114 417.9 350 63.1
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.6e-114 417.5 234 88.5
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.5e-109 401.0 196 95.9
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-99 366.3 245 75.9
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.1e-96 358.2 267 68.9
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-96 357.8 301 65.4
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-94 351.3 214 79.4
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.5e-92 342.4 167 97.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.2e-91 339.0 183 86.3
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-90 337.0 322 60.2
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.9e-84 317.0 154 95.5
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.2e-83 313.5 160 91.2
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 1.8e-81 307.8 156 92.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.4e-70 271.6 161 85.1
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.0e-68 265.4 161 82.6
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.8e-64 249.6 166 77.1
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-53 215.3 122 86.9
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 8.6e-52 209.1 105 98.1
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 2.6e-48 197.6 126 77.8
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-45 187.6 113 84.1
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.6e-45 186.8 275 44.4
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.1e-44 183.3 134 69.4
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.4e-38 164.5 147 64.6
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 2.1e-34 151.4 86 93.0
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 2.1e-34 151.4 98 80.6
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 2.3e-28 131.3 75 88.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 3.6e-26 124.0 73 86.3
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-22 111.3 55 98.2
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-19 101.7 58 86.2
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.0e-17 94.0 97 55.7
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 63 71.4
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 3.4e-16 90.9 47 89.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.3e-15 89.0 49 87.8
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 2.9e-15 87.8 61 77.0
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 6.5e-15 86.7 44 86.4
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.9e-14 85.1 88 59.1
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 2.5e-14 84.7 56 76.8
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-14 84.7 59 71.2
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 3.3e-11 74.3 55 74.5
AagrBONN_evm.TU.Sc2ySwM_362.31 Anthoceros agrestis HOM05D011518 ORTHO05D076736 9.3e-06 56.2 31 80.6


User provided reference genes

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