Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 1.3e-274 949.1 468 100.0
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 1.8e-241 839.0 472 89.2
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 1.0e-215 753.4 476 79.6
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 2.2e-210 735.7 478 77.6
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 4.0e-204 714.9 480 74.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.2e-202 709.1 474 74.3
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 2.8e-197 692.2 479 72.0
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 2.8e-197 692.2 482 70.7
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.8e-196 689.5 489 69.7
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 5.8e-195 684.5 480 71.7
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 2.2e-194 682.6 473 71.2
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 1.4e-193 679.9 479 70.6
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 1.9e-193 679.5 485 69.5
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 3.2e-193 678.7 474 68.6
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 4.1e-193 678.3 476 70.0
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 9.2e-193 677.2 478 70.9
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.1e-192 676.0 478 69.5
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 2.7e-192 675.6 477 70.6
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 1.7e-191 672.9 475 70.9
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 3.0e-191 672.2 480 68.3
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.5e-190 669.1 479 70.4
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.4e-188 663.3 469 70.6
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.1e-188 662.1 479 68.9
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 2.9e-186 655.6 480 68.5
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 6.4e-186 654.4 485 66.2
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 6.4e-186 654.4 485 67.0
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 8.3e-186 654.1 471 68.2
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 2.1e-184 649.4 471 67.7
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.7e-183 646.4 477 66.5
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 2.3e-183 646.0 481 66.3
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 3.0e-183 645.6 475 66.3
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 3.0e-183 645.6 477 66.2
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 3.0e-183 645.6 478 67.8
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 3.9e-183 645.2 469 69.3
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 5.1e-183 644.8 475 67.4
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 6.6e-183 644.4 485 66.6
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 8.6e-183 644.0 382 86.6
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 2.5e-182 642.5 483 66.5
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 3.3e-182 642.1 480 66.5
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 3.3e-182 642.1 477 65.6
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 4.3e-182 641.7 483 66.3
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 5.6e-182 641.3 482 67.6
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 7.3e-182 641.0 476 66.4
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 9.5e-182 640.6 471 67.1
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 9.5e-182 640.6 473 67.7
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 9.5e-182 640.6 471 67.3
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 1.2e-181 640.2 473 67.0
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 1.2e-181 640.2 473 67.2
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 3.6e-181 638.6 475 66.7
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 4.7e-181 638.3 475 66.9
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 1.8e-180 636.3 483 66.0
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 1.8e-180 636.3 478 65.9
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 1.8e-180 636.3 482 65.6
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 3.1e-180 635.6 491 64.6
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 1.5e-179 633.3 483 65.8
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.5e-179 633.3 473 65.8
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 2.6e-179 632.5 473 65.8
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 1.3e-178 630.2 485 65.4
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 1.3e-178 630.2 475 65.7
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 1.7e-178 629.8 485 65.4
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 8.4e-178 627.5 485 64.9
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 1.1e-177 627.1 476 66.2
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.4e-177 626.7 476 65.8
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 2.4e-177 625.9 486 63.0
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 5.4e-177 624.8 483 65.0
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 7.1e-177 624.4 480 64.0
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 1.2e-176 623.6 474 66.0
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 7.8e-176 620.9 480 64.8
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 1.7e-175 619.8 474 64.6
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 1.1e-174 617.1 458 65.3
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 2.8e-173 612.5 475 62.9
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 3.1e-172 609.0 475 64.0
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 9.9e-171 604.0 475 62.1
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 1.4e-169 600.1 497 63.2
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 3.9e-167 592.0 475 62.7
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 1.9e-166 589.7 473 63.0
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 7.9e-160 567.8 484 59.5
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 1.1e-158 563.9 475 59.8
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 3.8e-154 548.9 473 58.1
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 6.4e-154 548.1 494 57.5
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 3.5e-152 542.3 447 62.2
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 2.5e-150 536.2 374 69.5
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 2.1e-149 533.1 456 58.1
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 2.8e-141 506.1 319 77.1
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 3.7e-141 505.8 464 55.0
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 8.2e-141 504.6 383 64.0
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 5.9e-139 498.4 338 72.2
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.5e-126 457.2 316 69.6
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 6.3e-125 451.8 425 50.8
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 8.8e-119 431.4 469 47.1
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 1.7e-109 400.6 432 48.8
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 7.5e-102 375.2 255 71.8
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 5.4e-100 369.0 269 69.5
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.6e-99 367.5 274 68.6
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 1.6e-99 367.5 390 47.9
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 1.8e-95 354.0 440 43.9
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 2.6e-94 350.1 361 51.8
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.3e-93 347.8 260 65.4
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 5.4e-92 342.4 405 44.0
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 5.9e-91 339.0 299 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 9.5e-89 331.6 398 41.7
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.1e-88 330.5 319 55.5
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 5.2e-87 325.9 457 41.6
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 2.2e-85 320.5 239 65.3
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 6.2e-80 302.4 204 75.5
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 4.6e-75 286.2 210 64.3
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 4.3e-73 279.6 246 60.2
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 1.5e-62 244.6 236 56.4
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 2.2e-61 240.7 178 64.0
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 5.4e-52 209.5 188 59.6
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 2.1e-48 197.6 118 75.4
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 2.0e-46 191.0 118 74.6
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 6.7e-42 176.0 148 61.5
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 5.8e-38 162.9 108 78.7
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 1.9e-28 131.3 100 65.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 8.7e-26 122.5 117 55.6
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 2.8e-16 90.9 200 34.5
MD06G1154400 Malus domestica HOM05D006543 ORTHO05D008308 6.3e-16 89.7 200 34.5
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 2.0e-09 68.2 44 72.7
C09p09270 Brassica napus HOM05D039327 ORTHO05D041005 2.4e-07 61.2 52 61.5
BolC9t53840H Brassica oleracea HOM05D039327 ORTHO05D041005 2.4e-07 61.2 52 61.5
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 3.1e-07 60.8 33 78.8
Actinidia26749 Actinidia chinensis HOM05D006543 ORTHO05D008308 7.0e-07 59.7 47 63.8
MD06G1157100 Malus domestica HOM05D006543 ORTHO05D008308 7.0e-07 59.7 70 50.0


User provided reference genes

Program Settings