Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 5.8e-124 447.6 227 100.0
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.4e-123 444.1 227 99.1
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.6e-121 438.0 227 98.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.6e-121 438.0 228 98.2
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 8.1e-110 400.6 231 89.6
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.1e-101 372.1 184 98.9
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 8.4e-99 364.0 240 82.1
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 2.3e-96 355.9 240 79.6
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 6.2e-94 347.8 241 78.8
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 8.4e-91 337.4 210 80.0
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.7e-89 332.4 184 85.9
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 3.5e-89 332.0 227 75.3
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 6.0e-89 331.3 234 75.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 7.8e-89 330.9 207 79.7
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.0e-88 330.5 216 76.9
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 2.3e-88 329.3 227 75.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.3e-88 329.3 193 82.4
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 5.1e-88 328.2 222 73.9
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 5.1e-88 328.2 241 71.8
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 5.1e-88 328.2 209 79.9
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 6.6e-88 327.8 180 87.2
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 1.5e-87 326.6 188 84.0
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.9e-87 326.2 219 75.3
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.9e-87 326.2 214 76.2
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.9e-87 326.2 202 80.2
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.9e-87 326.2 231 73.6
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 1.9e-87 326.2 178 88.2
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.5e-87 325.9 180 87.2
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.5e-87 325.9 180 87.2
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 3.3e-87 325.5 203 80.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 5.6e-87 324.7 236 71.6
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 7.3e-87 324.3 231 73.2
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 7.3e-87 324.3 228 74.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 9.6e-87 323.9 233 74.2
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 9.6e-87 323.9 180 84.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 9.6e-87 323.9 237 73.8
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 9.6e-87 323.9 236 71.6
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.6e-86 323.2 227 73.6
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.6e-86 323.2 179 87.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.6e-86 323.2 187 82.9
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.6e-86 323.2 226 73.9
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.6e-86 323.2 226 75.2
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.1e-86 322.8 182 84.1
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.8e-86 322.4 226 74.8
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 3.6e-86 322.0 180 86.1
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.6e-86 322.0 180 87.2
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.6e-86 322.0 203 79.8
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.8e-86 321.6 218 75.2
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 4.8e-86 321.6 236 71.2
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 6.2e-86 321.2 239 70.7
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 6.2e-86 321.2 233 71.2
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 6.2e-86 321.2 216 75.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 8.1e-86 320.9 229 71.6
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.1e-85 320.5 225 73.8
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.1e-85 320.5 242 68.6
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.4e-85 320.1 234 71.8
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.4e-85 320.1 197 81.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 229 72.5
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 233 71.7
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 1.8e-85 319.7 234 71.4
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.8e-85 319.7 240 72.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.8e-85 319.7 232 71.1
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 2.4e-85 319.3 225 74.2
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.4e-85 319.3 231 71.0
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 3.1e-85 318.9 189 79.9
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 3.1e-85 318.9 245 70.6
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 3.1e-85 318.9 180 85.0
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 4.0e-85 318.5 234 70.9
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 4.0e-85 318.5 226 74.3
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 6.9e-85 317.8 197 80.2
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 6.9e-85 317.8 236 72.0
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 9.0e-85 317.4 197 80.2
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 9.0e-85 317.4 178 85.4
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 9.0e-85 317.4 235 69.8
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-84 317.0 228 74.1
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.2e-84 317.0 188 83.0
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.5e-84 316.6 236 70.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.0e-84 316.2 228 71.9
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.6e-84 315.8 235 71.9
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.4e-84 315.5 210 74.8
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 3.4e-84 315.5 178 84.8
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 4.5e-84 315.1 234 68.8
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.8e-84 314.7 233 70.4
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 7.6e-84 314.3 227 73.1
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 7.6e-84 314.3 227 73.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 9.9e-84 313.9 229 72.5
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-83 313.5 226 73.0
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.3e-83 313.5 187 80.2
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.9e-83 312.4 188 81.9
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 2.9e-83 312.4 226 71.7
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 4.9e-83 311.6 212 73.6
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 4.9e-83 311.6 179 83.2
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 4.9e-83 311.6 196 77.0
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 6.4e-83 311.2 234 70.5
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 8.4e-83 310.8 223 69.5
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 8.4e-83 310.8 176 84.1
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.1e-82 310.5 177 84.2
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 1.4e-82 310.1 227 70.9
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.4e-82 310.1 183 79.8
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 1.9e-82 309.7 229 68.1
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 2.4e-82 309.3 217 71.4
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.2e-82 308.5 217 72.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 2.1e-81 306.2 187 76.5
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.5e-79 299.3 181 78.5
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.6e-79 298.1 173 81.5
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 5.6e-79 298.1 166 83.7
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.8e-78 295.8 180 78.9
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 8.1e-78 294.3 233 67.8
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 7.6e-76 287.7 182 74.7
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.5e-75 284.6 206 71.4
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 3.0e-72 275.8 277 58.1
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 2.5e-71 272.7 150 84.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 8.2e-70 267.7 180 71.1
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 6.9e-69 264.6 228 62.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 7.6e-68 261.2 159 72.3
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 3.8e-67 258.8 234 61.1
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.7e-65 252.7 218 61.9
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.8e-64 250.0 240 59.6
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.1e-63 247.3 196 62.2
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.8e-59 232.3 207 60.9
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 3.0e-56 222.6 122 87.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 4.7e-49 198.7 134 72.4
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.0e-48 196.1 156 66.7
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 7.4e-47 191.4 110 78.2
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 4.1e-45 185.7 151 64.2
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 5.9e-44 181.8 112 82.1
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 7.7e-44 181.4 147 66.0
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 6.1e-41 171.8 101 81.2
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 4.0e-40 169.1 104 79.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 5.2e-40 168.7 104 78.8
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.5e-34 150.6 107 70.1
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 6.8e-32 141.7 124 61.3
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.5e-31 140.6 82 84.1
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 2.6e-31 139.8 78 88.5
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 7.5e-31 138.3 147 42.2
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.7e-28 129.8 75 85.3
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.9e-26 123.6 71 87.3
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 6.3e-22 108.6 77 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 3.6e-17 92.8 106 51.9
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 4.0e-16 89.4 114 52.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 2.0e-15 87.0 92 53.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.7e-15 85.5 49 79.6
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 3.3e-10 69.7 55 61.8
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 5.6e-10 68.9 47 68.1
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.1e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.1e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.5e-07 60.8 32 81.2


User provided reference genes

Program Settings