Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g30530 Fragaria vesca HOM05D000880 ORTHO05D008158 3.7e-60 234.6 109 100.0
FAN24G1145 Fragaria x ananassa HOM05D000880 ORTHO05D008158 1.4e-38 162.9 79 97.5
FvH4_2g30661 Fragaria vesca HOM05D000880 ORTHO05D008158 9.7e-37 156.8 120 69.2
FAN24G1353 Fragaria x ananassa HOM05D000880 ORTHO05D008158 9.7e-37 156.8 120 69.2
RcHm_v2.0_Chr6g0312231 Rosa chinensis HOM05D000880 ORTHO05D008158 7.0e-35 150.6 120 65.8
FAN20G0534 Fragaria x ananassa HOM05D000880 ORTHO05D008158 1.0e-33 146.7 121 66.1
Prupe.1G462400 Prunus persica HOM05D000880 ORTHO05D008158 1.5e-29 132.9 120 59.2
MD15G1110200 Malus domestica HOM05D000880 ORTHO05D008158 2.7e-26 122.1 121 55.4
Atru.chr7.2669 Acer truncatum HOM05D000880 ORTHO05D008158 5.5e-24 114.4 113 53.1
CiPaw.07G214700 Carya illinoinensis HOM05D000880 ORTHO05D008158 2.8e-23 112.1 115 53.0
Potri.006G277500 Populus trichocarpa HOM05D000880 ORTHO05D008158 4.7e-23 111.3 118 49.2
Aqoxy7G02771 Aquilegia oxysepala HOM05D000880 ORTHO05D008158 1.4e-22 109.8 109 51.4
TAR626G1691 Trochodendron aralioides HOM05D000880 ORTHO05D008158 1.4e-22 109.8 118 47.5
CsaV3_3G046930 Cucumis sativus L. HOM05D000880 ORTHO05D008158 2.3e-22 109.0 119 53.8
QL12p024664 Quercus lobata HOM05D000880 ORTHO05D008158 2.3e-22 109.0 113 50.4
Aqoxy3G04243 Aquilegia oxysepala HOM05D000880 ORTHO05D008158 3.0e-22 108.6 109 50.5
Medtr3g108700 Medicago truncatula HOM05D000880 ORTHO05D008158 3.0e-22 108.6 112 50.0
AUR62020632 Chenopodium quinoa HOM05D000880 ORTHO05D008158 4.0e-22 108.2 120 50.8
Sed0006739 Sechium edule HOM05D000880 ORTHO05D008158 4.0e-22 108.2 115 53.0
ClCG05G017430 Citrullus lanatus HOM05D000880 ORTHO05D008158 5.2e-22 107.8 115 53.0
MELO3C003644.2 Cucumis melo HOM05D000880 ORTHO05D008158 5.2e-22 107.8 119 52.9
Duzib168G1559 Durio zibethinus HOM05D000880 ORTHO05D008158 6.8e-22 107.5 120 48.3
AUR62038750 Chenopodium quinoa HOM05D000880 ORTHO05D008158 8.9e-22 107.1 109 52.3
Dinv26557 Davidia involucrata HOM05D000880 ORTHO05D008158 8.9e-22 107.1 120 50.0
Manes.16G136800 Manihot esculenta HOM05D000880 ORTHO05D008158 1.2e-21 106.7 119 48.7
TPR.G12367 Trifolium pratense HOM05D000880 ORTHO05D008158 1.5e-21 106.3 118 46.6
Ca_15679_v3 Cicer arietinum L. HOM05D000880 ORTHO05D008158 3.4e-21 105.1 112 48.2
Sc09g0007880 Simmondsia chinensis HOM05D000880 ORTHO05D008158 3.4e-21 105.1 118 49.2
Lj1g0027131 Lotus japonicus HOM05D000880 ORTHO05D008158 5.7e-21 104.4 114 49.1
PGR044G0601 Punica granatum HOM05D000880 ORTHO05D008158 7.5e-21 104.0 109 49.5
TWI34G0460 Tripterygium wilfordii HOM05D000880 ORTHO05D008158 7.5e-21 104.0 119 47.9
Oeu014113.1 Olea europaea HOM05D000880 ORTHO05D008158 9.8e-21 103.6 119 49.6
Migut.A00456 Erythranthe guttata HOM05D000880 ORTHO05D008158 1.3e-20 103.2 116 51.7
SEGI_03504 Sequoiadendron giganteum HOM05D000880 ORTHO05D008158 1.3e-20 103.2 120 47.5
Ciclev10010501m.g Citrus clementina HOM05D000880 ORTHO05D008158 1.7e-20 102.8 115 50.4
Eucgr.C03997 Eucalyptus grandis HOM05D000880 ORTHO05D008158 1.7e-20 102.8 95 53.7
Phvul.009G100200 Phaseolus vulgaris HOM05D000880 ORTHO05D008158 1.7e-20 102.8 118 47.5
ATR0626G237 Amborella trichopoda HOM05D000880 ORTHO05D008158 2.2e-20 102.4 76 65.8
Psat5g025080 Pisum sativum HOM05D000880 ORTHO05D008158 2.2e-20 102.4 110 49.1
Sabra06G0215200 Salix brachista HOM05D000880 ORTHO05D008158 2.8e-20 102.1 123 48.0
SGA_v2.0_scaffold27G11654 Striga asiatica HOM05D000880 ORTHO05D008158 2.8e-20 102.1 127 47.2
GSVIVG01035548001 Vitis vinifera HOM05D000880 ORTHO05D008158 2.8e-20 102.1 119 46.2
EL10Ac2g03714 Beta vulgaris HOM05D000880 ORTHO05D008158 3.7e-20 101.7 109 48.6
Lalb_Chr23g0268901 Lupinus albus HOM05D000880 ORTHO05D008158 4.9e-20 101.3 112 50.0
CSS0016378 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D008158 8.3e-20 100.5 113 47.8
Cpa.g.sc244.8 Carica papaya HOM05D000880 ORTHO05D008158 8.3e-20 100.5 109 47.7
arahy.Tifrunner.gnm1.ann1.95FWWQ Arachis hypogaea HOM05D000880 ORTHO05D008158 1.1e-19 100.1 107 49.5
arahy.Tifrunner.gnm1.ann1.C9KM7P Arachis hypogaea HOM05D000880 ORTHO05D008158 1.1e-19 100.1 107 49.5
MSTRG.25767 Avicennia marina HOM05D000880 ORTHO05D008158 1.1e-19 100.1 109 48.6
Os06g0661800 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D008158 1.4e-19 99.8 93 53.8
PSO421G0529 Papaver somniferum HOM05D000880 ORTHO05D008158 1.4e-19 99.8 110 49.1
CSS0036637 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D008158 1.8e-19 99.4 113 46.9
VMungo1309G2560 Vigna mungo HOM05D000880 ORTHO05D008158 1.8e-19 99.4 119 46.2
Ah.10g033780 Amaranthus hybridus HOM05D000880 ORTHO05D008158 2.4e-19 99.0 116 47.4
Glyma.04G074500 Glycine max HOM05D000880 ORTHO05D008158 2.4e-19 99.0 113 50.4
Gohir.D06G109200 Gossypium hirsutum HOM05D000880 ORTHO05D008158 2.4e-19 99.0 118 45.8
Gorai.010G124000 Gossypium raimondii HOM05D000880 ORTHO05D008158 2.4e-19 99.0 118 45.8
Actinidia03580 Actinidia chinensis HOM05D000880 ORTHO05D008158 3.1e-19 98.6 121 46.3
Thhalv10003995m.g Eutrema salsugineum HOM05D000880 ORTHO05D008158 4.1e-19 98.2 121 47.1
Rhsim07G0170300 Rhododendron simsii HOM05D000880 ORTHO05D008158 7.0e-19 97.4 120 47.5
THA.LOC104803319 Tarenaya hassleriana HOM05D000880 ORTHO05D008158 7.0e-19 97.4 119 47.1
PSO423G0300 Papaver somniferum HOM05D000880 ORTHO05D008158 9.2e-19 97.1 110 48.2
Gohir.A06G107000 Gossypium hirsutum HOM05D000880 ORTHO05D008158 1.2e-18 96.7 116 44.0
CDE02G2617 Ceratophyllum demersum HOM05D000880 ORTHO05D008158 2.0e-18 95.9 109 48.6
Hund06650 Selenicereus undatus HOM05D000880 ORTHO05D008158 2.0e-18 95.9 121 44.6
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 2.7e-18 95.5 112 49.1
Cc00_g04770 Coffea canephora HOM05D000880 ORTHO05D008158 2.7e-18 95.5 98 51.0
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 3.5e-18 95.1 112 48.2
C09p07120 Brassica napus HOM05D000880 ORTHO05D008158 3.5e-18 95.1 112 48.2
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 3.5e-18 95.1 112 48.2
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 3.5e-18 95.1 112 48.2
Carub.0006s2270 Capsella rubella HOM05D000880 ORTHO05D008158 3.5e-18 95.1 119 45.4
Nitab4.5_0000919g0070 Nicotiana tabacum HOM05D000880 ORTHO05D008158 3.5e-18 95.1 109 46.8
Nitab4.5_0000970g0030 Nicotiana tabacum HOM05D000880 ORTHO05D008158 3.5e-18 95.1 109 46.8
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 3.5e-18 95.1 119 46.2
Nn8g40848 Nelumbo nucifera HOM05D000880 ORTHO05D008158 4.5e-18 94.7 109 44.0
Peaxi162Scf00213g01024 Petunia axillaris HOM05D000880 ORTHO05D008158 4.5e-18 94.7 111 45.9
AT5G24850 Arabidopsis thaliana HOM05D000880 ORTHO05D008158 7.8e-18 94.0 119 44.5
BcaC04g23563 Brassica carinata HOM05D000880 ORTHO05D008158 7.8e-18 94.0 111 46.8
A06p35620 Brassica napus HOM05D000880 ORTHO05D008158 7.8e-18 94.0 112 48.2
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 7.8e-18 94.0 112 48.2
BraA09t36284Z Brassica rapa HOM05D000880 ORTHO05D008158 7.8e-18 94.0 112 48.2
Solyc08g074270.4 Solanum lycopersicum HOM05D000880 ORTHO05D008158 7.8e-18 94.0 115 46.1
Sopen08g022920 Solanum pennellii HOM05D000880 ORTHO05D008158 7.8e-18 94.0 115 46.1
PGSC0003DMG400029591 Solanum tuberosum HOM05D000880 ORTHO05D008158 7.8e-18 94.0 115 46.1
CAN.G195.2 Capsicum annuum HOM05D000880 ORTHO05D008158 2.3e-17 92.4 109 45.9
BcaB04g19802 Brassica carinata HOM05D000880 ORTHO05D008158 2.9e-17 92.0 110 48.2
Aa31LG11G4060 Aethionema arabicum HOM05D000880 ORTHO05D008158 3.8e-17 91.7 111 46.8
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 3.8e-17 91.7 127 41.7
Lj8C467G5 Lonicera japonica HOM05D000880 ORTHO05D008158 3.8e-17 91.7 96 51.0
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 5.0e-17 91.3 125 43.2
Sp2g22600 Schrenkiella parvula HOM05D000880 ORTHO05D008158 5.0e-17 91.3 115 46.1
AagrBONN_evm.TU.Sc2ySwM_368.3176 Anthoceros agrestis HOM05D000880 ORTHO05D008158 8.6e-17 90.5 102 46.1
AL6G36510 Arabidopsis lyrata HOM05D000880 ORTHO05D008158 1.1e-16 90.1 119 44.5
CARHR188600 Cardamine hirsuta HOM05D000880 ORTHO05D008158 1.1e-16 90.1 98 50.0
Haze_21695 Corylus avellana HOM05D000880 ORTHO05D008158 2.5e-16 89.0 136 39.0
Lj8C437G0 Lonicera japonica HOM05D000880 ORTHO05D008158 2.5e-16 89.0 96 47.9
Lj8C437G2 Lonicera japonica HOM05D000880 ORTHO05D008158 2.5e-16 89.0 102 46.1
HPP92_021891 Vanilla planifolia HOM05D000880 ORTHO05D008158 3.3e-16 88.6 95 47.4
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 4.3e-16 88.2 89 50.6
vmacro05104 Vaccinium macrocarpon HOM05D000880 ORTHO05D008158 5.6e-16 87.8 106 46.2
SMO172G0045 Selaginella moellendorffii HOM05D000880 ORTHO05D008158 9.5e-16 87.0 98 43.9
vmacro05105 Vaccinium macrocarpon HOM05D000880 ORTHO05D008158 9.5e-16 87.0 113 42.5
Mapoly0002s0311 Marchantia polymorpha HOM05D000880 ORTHO05D008158 2.8e-15 85.5 110 42.7
Pp3c21_7810 Physcomitrium patens HOM05D000880 ORTHO05D008158 3.6e-15 85.1 119 40.3
COL.COLO4_18614 Corchorus olitorius HOM05D000880 ORTHO05D008158 7.5e-13 77.4 49 67.3
Nitab4.5_0006693g0060 Nicotiana tabacum HOM05D000880 ORTHO05D283879 7.0e-11 70.9 76 46.1
CBR_g905 Chara braunii HOM05D000880 ORTHO05D008158 1.2e-10 70.1 143 34.3
MCO04G162 Micromonas commoda HOM05D000880 ORTHO05D008158 1.1e-06 57.0 80 36.2


User provided reference genes

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