Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 5.9e-169 597.4 299 100.0
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 6.1e-158 560.8 319 91.2
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 2.3e-157 558.9 295 93.9
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.2e-155 552.4 319 90.0
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.0e-148 529.3 273 95.6
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 8.3e-147 523.9 295 88.1
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 1.1e-143 513.5 296 86.8
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 1.9e-135 486.1 298 80.9
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.6e-134 483.0 290 82.4
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 6.2e-134 481.1 297 80.8
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 1.2e-132 476.9 291 80.4
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 1.2e-132 476.9 296 80.4
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.5e-132 476.5 295 79.3
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 9.9e-132 473.8 295 79.7
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 7.1e-130 467.6 295 78.3
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 7.1e-130 467.6 297 78.8
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 2.1e-129 466.1 298 80.2
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 2.3e-128 462.6 295 77.6
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 3.3e-127 458.8 273 82.4
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 4.3e-127 458.4 332 71.1
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 3.6e-126 455.3 297 76.8
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.4e-125 453.4 307 74.3
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 3.1e-125 452.2 295 76.3
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 3.1e-125 452.2 294 76.2
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 5.2e-125 451.4 300 77.0
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 9.0e-125 450.7 295 75.3
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 9.0e-125 450.7 299 75.6
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.7e-123 446.4 294 74.8
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 3.8e-123 445.3 298 74.5
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 4.9e-123 444.9 298 75.5
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 1.4e-122 443.4 299 74.6
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 2.4e-122 442.6 299 73.9
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 5.4e-122 441.4 295 74.9
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 9.3e-122 440.7 292 75.0
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 3.5e-121 438.7 299 74.6
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 4.6e-121 438.3 299 73.6
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.0e-120 437.2 299 74.6
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.3e-120 436.8 298 73.5
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 3.0e-120 435.6 293 73.4
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 3.9e-120 435.3 298 73.8
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 5.1e-120 434.9 288 75.3
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 5.1e-120 434.9 310 70.3
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 8.7e-120 434.1 301 74.1
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 8.7e-120 434.1 295 74.2
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 1.9e-119 433.0 288 74.7
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 4.3e-119 431.8 299 72.6
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 7.3e-119 431.0 295 74.2
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 9.6e-119 430.6 300 72.7
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 1.6e-118 429.9 298 73.8
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.6e-118 429.9 295 73.9
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 3.6e-118 428.7 298 72.5
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 4.8e-118 428.3 298 73.2
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 8.1e-118 427.6 296 72.3
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 8.1e-118 427.6 297 71.4
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 1.1e-117 427.2 299 71.9
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 2.4e-117 426.0 299 71.6
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 3.1e-117 425.6 297 71.4
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 6.9e-117 424.5 299 72.9
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 9.0e-117 424.1 295 73.6
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.2e-116 423.7 438 59.6
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.5e-116 423.3 299 71.2
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 2.6e-116 422.5 295 72.2
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 2.6e-116 422.5 297 72.7
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 3.4e-116 422.2 299 70.2
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 9.9e-116 420.6 296 71.3
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 1.3e-115 420.2 297 73.7
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 2.2e-115 419.5 296 70.9
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.9e-114 416.4 296 73.0
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 3.2e-114 415.6 296 70.3
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 1.2e-113 413.7 302 68.2
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.6e-113 411.8 318 67.9
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 6.7e-112 407.9 297 70.7
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 6.7e-112 407.9 280 75.0
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.4e-111 404.4 280 73.6
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.6e-110 403.3 293 68.3
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.6e-110 403.3 296 67.2
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 3.7e-110 402.1 291 71.1
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.1e-109 399.1 283 73.5
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 6.9e-109 397.9 293 67.2
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 2.6e-108 396.0 295 69.5
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 1.7e-107 393.3 256 77.3
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.9e-107 392.5 296 69.6
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.5e-105 385.6 305 65.2
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 6.7e-104 381.3 241 78.8
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.5e-103 380.2 288 63.2
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 4.9e-99 365.2 296 62.2
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 1.9e-98 363.2 322 62.1
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 4.2e-98 362.1 277 67.1
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.3e-96 356.3 248 70.6
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 1.6e-94 350.1 303 61.7
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.5e-92 343.6 246 72.0
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 5.9e-92 341.7 247 70.0
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 5.9e-92 341.7 211 80.6
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.0e-91 340.9 210 79.0
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 3.2e-90 335.9 241 73.9
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 4.6e-89 332.0 243 71.6
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 6.1e-89 331.6 273 65.2
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 5.7e-87 325.1 215 74.4
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 8.2e-86 321.2 301 54.2
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 2.0e-84 316.6 299 52.2
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 2.4e-77 293.1 288 57.3
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.1e-77 292.7 248 61.3
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 5.9e-76 288.5 221 67.0
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 1.1e-74 284.3 214 69.6
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 8.0e-73 278.1 238 64.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.4e-69 266.5 314 45.9
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 7.0e-69 265.0 178 76.4
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 3.8e-67 259.2 252 57.5
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 6.1e-65 251.9 186 66.7
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 8.0e-65 251.5 220 62.3
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 4.0e-64 249.2 149 79.9
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 5.3e-61 238.8 175 70.3
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 5.9e-60 235.3 232 59.5
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 8.8e-56 221.5 200 63.5
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 4.1e-53 212.6 161 67.7
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 1.5e-50 204.1 122 78.7
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 1.2e-47 194.5 111 80.2
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.4e-45 187.6 132 70.5
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 3.4e-39 166.4 95 86.3
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 1.7e-38 164.1 285 35.8
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.4e-37 161.0 96 78.1
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 2.3e-35 153.7 334 33.2
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 3.3e-34 149.8 83 81.9
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 4.3e-34 149.4 122 67.2
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 3.1e-32 143.3 154 51.3
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.6e-28 131.0 254 33.5
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 3.5e-28 129.8 70 88.6
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 3.6e-25 119.8 157 44.6
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 4.7e-25 119.4 133 45.1
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.2e-21 106.7 92 64.1
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 6.6e-19 99.0 105 54.3
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 3.4e-15 86.7 89 58.4
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.7e-11 74.3 85 57.6
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 1.3e-09 68.2 31 83.9
Cfa016005 Carpinus fangiana HOM05D005614 ORTHO05D006759 8.1e-09 65.5 51 66.7
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 9.0e-08 62.0 54 57.4


User provided reference genes

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