Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 7.8e-172 607.1 311 100.0
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 7.8e-172 607.1 311 100.0
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 4.1e-165 584.7 311 95.8
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.4e-158 560.8 311 92.9
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 5.4e-149 531.2 312 88.1
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.0e-131 473.8 316 77.5
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.0e-131 473.8 316 77.5
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.9e-131 471.9 266 92.1
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 3.3e-130 468.8 314 79.6
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 3.3e-130 468.8 316 76.6
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 9.6e-130 467.2 316 76.9
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 9.0e-128 460.7 309 77.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.5e-127 459.9 312 77.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 4.5e-127 458.4 316 75.6
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 5.8e-127 458.0 312 77.2
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 2.2e-126 456.1 313 76.0
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 2.2e-126 456.1 314 74.2
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 2.2e-126 456.1 312 76.6
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 3.8e-126 455.3 311 76.5
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 5.5e-125 451.4 311 75.2
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 2.1e-124 449.5 316 74.1
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.5e-124 448.7 315 76.2
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 4.6e-124 448.4 320 75.0
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.0e-124 448.0 311 75.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 6.0e-124 448.0 311 75.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-123 446.8 311 74.6
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.8e-123 446.4 311 74.9
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.8e-123 446.4 311 74.9
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 5.1e-123 444.9 311 74.9
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.5e-122 443.4 312 75.3
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.5e-122 443.4 312 75.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 2.5e-122 442.6 312 75.3
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.3e-122 442.2 316 75.3
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.3e-121 440.3 312 73.7
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.6e-121 439.9 316 72.2
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.8e-121 439.1 310 75.5
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 4.8e-121 438.3 314 72.6
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 6.2e-121 438.0 312 73.1
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 6.2e-121 438.0 315 72.7
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 1.8e-120 436.4 316 71.8
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.4e-120 436.0 314 72.0
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 2.4e-120 436.0 313 71.2
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.1e-120 435.6 314 71.3
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 4.0e-120 435.3 311 72.7
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 5.3e-120 434.9 312 72.8
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.3e-120 434.9 311 73.6
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.4e-119 432.2 314 71.0
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 5.8e-119 431.4 318 71.7
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.3e-118 430.3 316 71.2
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 7.1e-117 424.5 311 71.4
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 7.1e-117 424.5 314 71.0
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.2e-116 423.7 311 70.7
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.1e-116 422.9 351 65.2
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.7e-116 422.5 319 69.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 3.5e-116 422.2 312 71.2
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.9e-116 421.0 311 71.1
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 7.9e-116 421.0 316 70.6
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.0e-115 420.6 311 70.1
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-115 420.6 312 69.6
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.8e-115 419.9 316 69.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.8e-115 419.9 292 76.0
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 8.7e-115 417.5 311 70.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 8.7e-115 417.5 316 70.6
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 8.7e-115 417.5 322 68.0
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 8.7e-115 417.5 311 70.1
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 8.7e-115 417.5 313 70.0
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.9e-114 416.4 313 70.0
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 1.9e-114 416.4 311 70.1
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 3.3e-114 415.6 320 68.4
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 7.4e-114 414.5 318 69.2
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.3e-113 413.7 311 70.4
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.2e-113 412.9 317 69.1
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.8e-113 412.5 312 68.6
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 6.3e-113 411.4 311 69.5
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 4.1e-112 408.7 311 70.4
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 6.9e-112 407.9 317 68.5
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 4.5e-111 405.2 311 67.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.9e-111 404.8 347 63.7
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 7.7e-111 404.4 312 68.3
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.3e-110 403.7 311 69.1
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 5.0e-110 401.7 314 67.8
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 6.5e-110 401.4 320 67.2
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.1e-109 400.6 312 68.3
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.1e-109 400.6 311 67.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.1e-109 400.6 311 67.5
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 3.2e-109 399.1 311 67.5
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 3.2e-109 399.1 312 68.3
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 7.2e-109 397.9 311 68.5
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.6e-108 396.7 271 77.9
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.1e-108 396.4 311 67.2
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.1e-108 396.4 311 67.2
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.1e-108 396.4 311 67.2
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.7e-108 396.0 315 67.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.4e-107 393.7 317 67.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 3.0e-107 392.5 333 64.6
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 5.1e-107 391.7 315 65.7
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.8e-105 386.0 313 64.2
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.4e-104 382.9 224 86.2
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.4e-104 382.9 314 65.9
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 1.2e-100 370.5 356 56.5
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 2.7e-100 369.4 332 58.7
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 7.9e-100 367.9 354 57.3
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.5e-98 363.6 287 67.2
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 3.3e-98 362.5 263 71.9
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 6.3e-97 358.2 313 62.6
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 2.5e-93 346.3 309 57.9
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.2e-92 344.0 269 71.4
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 2.7e-92 342.8 203 84.2
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 6.7e-91 338.2 313 61.3
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 5.7e-90 335.1 311 61.1
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 7.4e-90 334.7 311 61.4
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 3.7e-89 332.4 211 79.6
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.0e-88 328.2 317 55.2
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.0e-87 326.6 288 62.5
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.3e-86 323.9 269 65.4
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 8.3e-81 304.7 311 53.4
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 3.1e-80 302.8 185 82.7
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 9.8e-66 254.6 294 51.0
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.4e-64 250.0 181 71.8
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 1.0e-62 244.6 138 89.9
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 2.8e-60 236.5 190 66.8
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.0e-59 234.6 249 56.2
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 1.4e-59 234.2 386 40.9
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 4.0e-59 232.6 414 39.1
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 6.4e-57 225.3 192 67.7
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.6e-47 194.1 117 86.3
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.6e-47 194.1 191 56.0
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 2.3e-46 190.3 194 56.7
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 3.0e-46 189.9 312 40.7
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.8e-43 180.6 227 44.9
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 8.3e-41 171.8 216 45.4
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.2e-39 167.9 204 48.5
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-38 164.5 95 89.5
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.1e-35 153.3 107 69.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.2e-34 151.4 96 83.3
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.9e-33 146.7 122 66.4
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.4e-32 143.7 93 82.8
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.1e-32 142.1 126 61.1
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 7.1e-32 142.1 126 61.1
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-31 141.0 259 42.1
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 6.9e-27 125.6 80 77.5
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.0e-22 111.7 235 37.9
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.5e-21 107.8 99 61.6
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.2e-16 89.7 107 55.1
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.5e-16 89.4 62 74.2
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.3e-13 80.1 130 42.3
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 4.8e-12 76.3 39 79.5
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.9e-08 64.3 43 65.1
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.7e-07 60.5 62 58.1
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 4.6e-07 59.7 57 66.7
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.9e-07 58.9 82 41.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 7.9e-07 58.9 43 65.1
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 2.3e-06 57.4 61 45.9
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.9e-06 56.6 48 47.9
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 5.1e-06 56.2 63 42.9


User provided reference genes

Program Settings