Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g13831 Fragaria vesca HOM05D002499 ORTHO05D002812 1.7e-121 439.5 251 100.0
FAN23G2991 Fragaria x ananassa HOM05D002499 ORTHO05D002812 4.5e-37 159.1 105 81.9
FAN28G0818 Fragaria x ananassa HOM05D002499 ORTHO05D002812 5.9e-37 158.7 106 81.1
FAN26G1988 Fragaria x ananassa HOM05D002499 ORTHO05D002812 7.7e-37 158.3 107 81.3
FvH4_1g02780 Fragaria vesca HOM05D002499 ORTHO05D002812 1.3e-36 157.5 106 81.1
FAN19G2608 Fragaria x ananassa HOM05D002499 ORTHO05D002812 1.3e-36 157.5 106 81.1
RcHm_v2.0_Chr2g0087861 Rosa chinensis HOM05D002499 ORTHO05D002812 4.0e-33 146.0 101 79.2
FvH4_3g28060 Fragaria vesca HOM05D010053 ORTHO05D017010 1.2e-26 124.4 79 81.0
FAN14G1672 Fragaria x ananassa HOM05D010053 ORTHO05D017010 2.7e-26 123.2 79 78.5
FvH4_4g24430 Fragaria vesca HOM05D010053 ORTHO05D017010 4.7e-26 122.5 79 79.7
FAN11G2422 Fragaria x ananassa HOM05D010053 ORTHO05D017010 4.7e-26 122.5 79 78.5
FAN16G0517 Fragaria x ananassa HOM05D010053 ORTHO05D017010 6.1e-26 122.1 79 78.5
FAN05G0403 Fragaria x ananassa HOM05D010053 ORTHO05D017010 1.0e-25 121.3 79 78.5
FAN02G2225 Fragaria x ananassa HOM05D010053 ORTHO05D017010 2.3e-25 120.2 79 77.2
FAN04G0788 Fragaria x ananassa HOM05D010053 ORTHO05D017010 2.3e-25 120.2 79 78.5
FAN24G0453 Fragaria x ananassa HOM05D010053 ORTHO05D002812 2.3e-25 120.2 79 78.5
MD02G1027800 Malus domestica HOM05D002499 ORTHO05D002812 3.0e-25 119.8 110 61.8
FAN19G1638 Fragaria x ananassa HOM05D010053 ORTHO05D002812 5.2e-25 119.0 79 77.2
FAN24G1948 Fragaria x ananassa HOM05D002499 ORTHO05D045998 6.8e-25 118.6 85 72.9
FAN12G0608 Fragaria x ananassa HOM05D010053 ORTHO05D017010 8.8e-25 118.2 79 75.9
FvH4_2g23660 Fragaria vesca HOM05D002499 ORTHO05D045998 1.2e-24 117.9 85 71.8
FAN01G1558 Fragaria x ananassa HOM05D010053 ORTHO05D017010 3.4e-24 116.3 79 77.2
MD15G1169400 Malus domestica HOM05D002499 ORTHO05D002812 5.7e-24 115.5 108 62.0
Prupe.6G053200 Prunus persica HOM05D002499 ORTHO05D002812 2.2e-23 113.6 108 62.0
Prupe.7G247000 Prunus persica HOM05D002499 ORTHO05D002812 2.7e-21 106.7 108 59.3
CiPaw.04G173800 Carya illinoinensis HOM05D002499 ORTHO05D002812 1.3e-20 104.4 101 58.4
Manes.14G114800 Manihot esculenta HOM05D002499 ORTHO05D002812 8.6e-20 101.7 104 53.8
Haze_25537 Corylus avellana HOM05D002499 ORTHO05D002812 1.5e-19 100.9 101 56.4
QL02p089560 Quercus lobata HOM05D002499 ORTHO05D002812 1.5e-19 100.9 102 57.8
Ciclev10008137m.g Citrus clementina HOM05D002499 ORTHO05D002812 1.9e-19 100.5 105 53.3
Haze_25532 Corylus avellana HOM05D002499 ORTHO05D002812 1.9e-19 100.5 101 55.4
Cfa003408 Carpinus fangiana HOM05D002499 ORTHO05D002812 2.5e-19 100.1 101 59.4
Sabra18G0108900 Salix brachista HOM05D002499 ORTHO05D002812 7.3e-19 98.6 102 53.9
CANSAT11G0323 Cannabis sativa HOM05D002499 ORTHO05D002812 1.6e-18 97.4 115 48.7
CsaV3_2G003050 Cucumis sativus L. HOM05D002499 ORTHO05D002812 2.8e-18 96.7 112 49.1
MELO3C004460.2 Cucumis melo HOM05D002499 ORTHO05D002812 3.6e-18 96.3 112 49.1
THA.LOC104815274 Tarenaya hassleriana HOM05D002499 ORTHO05D002812 2.3e-17 93.6 108 50.0
Sed0022185 Sechium edule HOM05D002499 ORTHO05D002812 5.2e-17 92.4 112 49.1
Potri.018G128100 Populus trichocarpa HOM05D002499 ORTHO05D002812 6.8e-17 92.0 105 53.3
TAR625G0500 Trochodendron aralioides HOM05D002499 ORTHO05D002812 1.5e-16 90.9 104 53.8
TWI34G1387 Tripterygium wilfordii HOM05D002499 ORTHO05D002812 3.4e-16 89.7 99 52.5
ClCG11G003230 Citrullus lanatus HOM05D002499 ORTHO05D002812 5.7e-16 89.0 98 51.0
Dinv36490 Davidia involucrata HOM05D002499 ORTHO05D002812 7.5e-16 88.6 106 48.1
Psat0s3887g0080 Pisum sativum HOM05D002499 ORTHO05D002812 7.5e-16 88.6 95 61.1
Atru.chr7.1114 Acer truncatum HOM05D002499 ORTHO05D002812 9.8e-16 88.2 102 51.0
BcaC01g02563 Brassica carinata HOM05D002499 ORTHO05D002812 2.9e-15 86.7 108 45.4
C03p63460 Brassica napus HOM05D002499 ORTHO05D002812 2.9e-15 86.7 108 45.4
Sp2g26300 Schrenkiella parvula HOM05D002499 ORTHO05D002812 4.9e-15 85.9 108 46.3
THA.LOC104808969 Tarenaya hassleriana HOM05D002499 ORTHO05D002812 4.9e-15 85.9 107 46.7
A06p29900 Brassica napus HOM05D002499 ORTHO05D002812 8.3e-15 85.1 108 45.4
BraA06t25941Z Brassica rapa HOM05D002499 ORTHO05D002812 8.3e-15 85.1 108 45.4
CSS0002338 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 1.1e-14 84.7 106 50.9
Carub.0004s2451 Capsella rubella HOM05D002499 ORTHO05D002812 1.1e-14 84.7 108 49.1
Phvul.003G167400 Phaseolus vulgaris HOM05D002499 ORTHO05D002812 1.1e-14 84.7 99 52.5
PGR142G2779 Punica granatum HOM05D002499 ORTHO05D002812 1.1e-14 84.7 99 50.5
AT2G42160 Arabidopsis thaliana HOM05D002499 ORTHO05D002812 1.4e-14 84.3 108 47.2
Ca_06933_v3 Cicer arietinum L. HOM05D002499 ORTHO05D002812 1.8e-14 84.0 100 54.0
Ca_30462_v3 Cicer arietinum L. HOM05D002499 ORTHO05D002812 1.8e-14 84.0 100 54.0
COL.COLO4_35127 Corchorus olitorius HOM05D002499 ORTHO05D002812 1.8e-14 84.0 100 49.0
GSVIVG01015569001 Vitis vinifera HOM05D002499 ORTHO05D002812 2.4e-14 83.6 99 48.5
BolC3t18598H Brassica oleracea HOM05D002499 ORTHO05D002812 3.2e-14 83.2 108 44.4
Cpa.g.sc46.26 Carica papaya HOM05D002499 ORTHO05D002812 3.2e-14 83.2 101 48.5
VMungo1215G3151 Vigna mungo HOM05D002499 ORTHO05D002812 3.2e-14 83.2 99 51.5
Aqoxy7G03660 Aquilegia oxysepala HOM05D002499 ORTHO05D002812 4.1e-14 82.8 99 45.5
Gohir.A07G037100 Gossypium hirsutum HOM05D002499 ORTHO05D002812 4.1e-14 82.8 100 48.0
Thecc.09G130200 Theobroma cacao HOM05D002499 ORTHO05D002812 5.4e-14 82.4 100 48.0
CARHR107560 Cardamine hirsuta HOM05D002499 ORTHO05D002812 7.0e-14 82.0 107 46.7
Nn2g12090 Nelumbo nucifera HOM05D002499 ORTHO05D002812 1.2e-13 81.3 108 48.1
Aa31LG5G9190 Aethionema arabicum HOM05D002499 ORTHO05D002812 2.0e-13 80.5 106 44.3
Glyma.13G158700 Glycine max HOM05D002499 ORTHO05D002812 3.5e-13 79.7 102 48.0
Medtr4g114970 Medicago truncatula HOM05D002499 ORTHO05D002812 3.5e-13 79.7 101 48.5
Gohir.D07G041300 Gossypium hirsutum HOM05D002499 ORTHO05D002812 4.6e-13 79.3 100 46.0
arahy.Tifrunner.gnm1.ann1.34GBRB Arachis hypogaea HOM05D002499 ORTHO05D002812 5.9e-13 79.0 99 48.5
arahy.Tifrunner.gnm1.ann1.G6L3X6 Arachis hypogaea HOM05D002499 ORTHO05D002812 5.9e-13 79.0 99 48.5
Duzib168G1186 Durio zibethinus HOM05D002499 ORTHO05D002812 5.9e-13 79.0 102 49.0
Thhalv10004093m.g Eutrema salsugineum HOM05D002499 ORTHO05D002812 5.9e-13 79.0 108 42.6
AL4G40530 Arabidopsis lyrata HOM05D002499 ORTHO05D002812 7.8e-13 78.6 108 45.4
Glyma.17G112600 Glycine max HOM05D002499 ORTHO05D002812 7.8e-13 78.6 99 48.5
Actinidia26380 Actinidia chinensis HOM05D002499 ORTHO05D002812 1.3e-12 77.8 92 53.3
Gorai.001G043700 Gossypium raimondii HOM05D002499 ORTHO05D002812 1.3e-12 77.8 100 45.0
Rhsim03G0250100 Rhododendron simsii HOM05D002499 ORTHO05D002812 5.0e-12 75.9 82 50.0
Lalb_Chr13g0301691 Lupinus albus HOM05D002499 ORTHO05D002812 6.6e-12 75.5 96 49.0
vmacro06145 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 1.5e-11 74.3 98 42.9
Actinidia38731 Actinidia chinensis HOM05D002499 ORTHO05D002812 2.5e-11 73.6 68 55.9
PSO210G6812 Papaver somniferum HOM05D002499 ORTHO05D002812 5.6e-11 72.4 125 36.8
PSO210G3882 Papaver somniferum HOM05D002499 ORTHO05D002812 9.5e-11 71.6 125 36.8
MSTRG.5275 Avicennia marina HOM05D002499 ORTHO05D002812 1.2e-10 71.2 112 38.4
Eucgr.C01353 Eucalyptus grandis HOM05D002499 ORTHO05D002812 2.1e-10 70.5 67 59.7
Eucgr.C01405 Eucalyptus grandis HOM05D002499 ORTHO05D002812 2.1e-10 70.5 67 59.7
Eucgr.C01418 Eucalyptus grandis HOM05D002499 ORTHO05D002812 2.1e-10 70.5 67 59.7
DCAR_014897 Daucus carota HOM05D002499 ORTHO05D002812 2.8e-10 70.1 105 37.1
MBI11_g31278_MAGBIO Magnolia biondii HOM05D002499 ORTHO05D002812 8.0e-10 68.6 77 46.8
Hund09273 Selenicereus undatus HOM05D002499 ORTHO05D002812 8.0e-10 68.6 107 43.9
Lj4g0004899 Lotus japonicus HOM05D002499 ORTHO05D002812 1.0e-09 68.2 100 44.0
Rhsim06G0183400 Rhododendron simsii HOM05D002499 ORTHO05D002812 1.0e-09 68.2 97 46.4
Ah.09g225100 Amaranthus hybridus HOM05D002499 ORTHO05D002812 2.3e-09 67.0 107 43.9
EL10Ac8g18703 Beta vulgaris HOM05D002499 ORTHO05D002812 2.3e-09 67.0 101 43.6
Migut.N01082 Erythranthe guttata HOM05D002499 ORTHO05D002812 3.1e-09 66.6 85 42.4
Eucgr.C01440 Eucalyptus grandis HOM05D002499 ORTHO05D002812 3.1e-09 66.6 67 58.2
SalBow6G3793 Salvia bowleyana HOM05D002499 ORTHO05D002812 5.2e-09 65.9 90 42.2
SHI03367 Sapria himalayana HOM05D002499 ORTHO05D002812 5.2e-09 65.9 92 43.5
ATR0767G236 Amborella trichopoda HOM05D002499 ORTHO05D002812 6.8e-09 65.5 84 44.0
HanXRQChr05g0138581 Helianthus annuus HOM05D002499 ORTHO05D002812 1.2e-08 64.7 107 36.4
Haze_16626 Corylus avellana HOM05D002499 ORTHO05D002812 1.5e-08 64.3 80 43.8
Haze_16629 Corylus avellana HOM05D002499 ORTHO05D002812 1.5e-08 64.3 80 43.8
Eucgr.C01400 Eucalyptus grandis HOM05D002499 ORTHO05D002812 2.0e-08 63.9 67 56.7
Cc11_g03280 Coffea canephora HOM05D002499 ORTHO05D002812 4.4e-08 62.8 92 41.3
FAN06G1521 Fragaria x ananassa HOM05D010053 ORTHO05D211076 4.4e-08 62.8 44 77.3
FAN28G0346 Fragaria x ananassa HOM05D010053 ORTHO05D200427 9.8e-08 61.6 80 47.5
Atru.chr1.1502 Acer truncatum HOM05D002499 ORTHO05D002812 1.3e-07 61.2 100 36.0
arahy.Tifrunner.gnm1.ann1.MRTC1T Arachis hypogaea HOM05D000042 ORTHO05D013762 1.3e-07 61.2 100 40.0
Cfa001916 Carpinus fangiana HOM05D002499 ORTHO05D002812 1.7e-07 60.8 80 42.5
Cc06_g08180 Coffea canephora HOM05D002499 ORTHO05D002812 1.7e-07 60.8 101 40.6
arahy.Tifrunner.gnm1.ann1.E2M9XD Arachis hypogaea HOM05D002499 ORTHO05D013762 2.9e-07 60.1 63 47.6
DCAR_021361 Daucus carota HOM05D002499 ORTHO05D002812 3.7e-07 59.7 105 39.0
Actinidia08951 Actinidia chinensis HOM05D002499 ORTHO05D002812 4.9e-07 59.3 111 36.0
FAN22G1853 Fragaria x ananassa HOM05D010053 ORTHO05D204577 4.9e-07 59.3 80 46.2
unitig_749.g13489 Utricularia gibba HOM05D002499 ORTHO05D002812 4.9e-07 59.3 86 38.4
arahy.Tifrunner.gnm1.ann1.W4EMGT Arachis hypogaea HOM05D000879 ORTHO05D013762 6.4e-07 58.9 85 42.4
FAN04G0754 Fragaria x ananassa HOM05D010053 ORTHO05D199835 6.4e-07 58.9 80 46.2
Thecc.06G035800 Theobroma cacao HOM05D002499 ORTHO05D002812 6.4e-07 58.9 111 33.3
Dinv23317 Davidia involucrata HOM05D002499 ORTHO05D002812 1.1e-06 58.2 80 40.0
Duzib235G1396 Durio zibethinus HOM05D002499 ORTHO05D002812 1.1e-06 58.2 79 39.2
Gohir.A05G121300 Gossypium hirsutum HOM05D002499 ORTHO05D002812 1.1e-06 58.2 79 39.2
Gorai.009G125800 Gossypium raimondii HOM05D002499 ORTHO05D002812 1.1e-06 58.2 79 39.2
Cpa.g.sc10.127 Carica papaya HOM05D002499 ORTHO05D002812 1.4e-06 57.8 79 39.2
HanXRQChr05g0140801 Helianthus annuus HOM05D002499 ORTHO05D002812 1.4e-06 57.8 93 38.7
PGR102G1959 Punica granatum HOM05D002499 ORTHO05D002812 1.4e-06 57.8 102 35.3
SGA_v2.0_scaffold219G42579 Striga asiatica HOM05D002499 ORTHO05D002812 1.4e-06 57.8 106 36.8
arahy.Tifrunner.gnm1.ann1.513ED8 Arachis hypogaea HOM05D002499 ORTHO05D013762 1.9e-06 57.4 81 40.7
FAN18G4401 Fragaria x ananassa HOM05D010053 ORTHO05D208043 1.9e-06 57.4 44 70.5
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 1.9e-06 57.4 85 37.6
QL05p033830 Quercus lobata HOM05D002499 ORTHO05D002812 1.9e-06 57.4 87 37.9
vmacro16869 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 1.9e-06 57.4 105 33.3
vmacro17297 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 1.9e-06 57.4 105 33.3
arahy.Tifrunner.gnm1.ann1.2UY518 Arachis hypogaea HOM05D000879 ORTHO05D013762 2.4e-06 57.0 85 38.8
CiPaw.01G251600 Carya illinoinensis HOM05D002499 ORTHO05D002812 2.4e-06 57.0 87 37.9
ECA236G0593 Erigeron canadensis HOM05D002499 ORTHO05D002812 2.4e-06 57.0 81 44.4
FAN01G0204 Fragaria x ananassa HOM05D010053 ORTHO05D205026 2.4e-06 57.0 80 43.8
FAN24G0308 Fragaria x ananassa HOM05D010053 ORTHO05D206942 2.4e-06 57.0 44 70.5
Sabra05G0090600 Salix brachista HOM05D002499 ORTHO05D002812 2.4e-06 57.0 79 39.2
Hund06540 Selenicereus undatus HOM05D002499 ORTHO05D002812 2.4e-06 57.0 80 40.0
ATR0800G174 Amborella trichopoda HOM05D002499 ORTHO05D002812 3.2e-06 56.6 79 41.8
CSS0036691 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 3.2e-06 56.6 80 40.0
CDE06G1251 Ceratophyllum demersum HOM05D002499 ORTHO05D002812 3.2e-06 56.6 114 38.6
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 3.2e-06 56.6 90 36.7
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 3.2e-06 56.6 88 35.2
TAR625G0939 Trochodendron aralioides HOM05D002499 ORTHO05D002812 3.2e-06 56.6 96 37.5
ClCG09G003160 Citrullus lanatus HOM05D002499 ORTHO05D002812 4.1e-06 56.2 111 33.3
FAN04G3186 Fragaria x ananassa HOM05D010053 ORTHO05D204191 4.1e-06 56.2 80 45.0
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 4.1e-06 56.2 85 36.5
Glyma.15G005300 Glycine max HOM05D002499 ORTHO05D002812 5.4e-06 55.8 129 32.6
Lalb_Chr22g0350771 Lupinus albus HOM05D002499 ORTHO05D002812 5.4e-06 55.8 137 34.3
Potri.007G063900 Populus trichocarpa HOM05D002499 ORTHO05D002812 5.4e-06 55.8 79 36.7
Sc12g0008570 Simmondsia chinensis HOM05D002499 ORTHO05D002812 5.4e-06 55.8 96 36.5
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 5.4e-06 55.8 85 36.5
Aqoxy3G01317 Aquilegia oxysepala HOM05D002499 ORTHO05D002812 7.0e-06 55.5 92 31.5
AL2G40890 Arabidopsis lyrata HOM05D002499 ORTHO05D002812 7.0e-06 55.5 85 36.5
CAN.G138.5 Capsicum annuum HOM05D002499 ORTHO05D002812 7.0e-06 55.5 87 42.5
Thhalv10018494m.g Eutrema salsugineum HOM05D002499 ORTHO05D002812 7.0e-06 55.5 82 36.6
HPP92_005343 Vanilla planifolia HOM05D002499 ORTHO05D002812 7.0e-06 55.5 79 39.2
CARHR074090 Cardamine hirsuta HOM05D002499 ORTHO05D002812 9.2e-06 55.1 79 36.7
Nitab4.5_0000028g0080 Nicotiana tabacum HOM05D002499 ORTHO05D002812 9.2e-06 55.1 78 46.2
PSO017G4237 Papaver somniferum HOM05D002499 ORTHO05D002812 9.2e-06 55.1 79 40.5
Potri.005G110500 Populus trichocarpa HOM05D002499 ORTHO05D002812 9.2e-06 55.1 79 38.0
Prupe.3G094400 Prunus persica HOM05D002499 ORTHO05D002812 9.2e-06 55.1 100 33.0


User provided reference genes

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