Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.3e-232 808.5 402 100.0
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-231 806.2 402 99.8
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-229 799.7 402 99.5
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.0e-229 797.7 402 99.3
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.5e-228 795.8 402 99.0
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 3.5e-217 758.1 402 95.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 6.7e-208 727.2 397 92.2
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.2e-206 720.7 405 90.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 7.6e-204 713.8 406 88.4
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 2.2e-203 712.2 405 88.6
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 3.8e-203 711.4 402 88.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 8.4e-203 710.3 403 88.6
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.1e-202 709.9 405 88.1
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 4.2e-202 708.0 407 88.0
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 4.2e-202 708.0 407 87.7
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 7.1e-202 707.2 408 86.8
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.2e-201 706.4 408 88.0
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.7e-201 705.3 407 88.2
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.7e-201 705.3 404 87.9
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 3.5e-201 704.9 405 88.1
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 4.6e-201 704.5 405 88.1
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 2.3e-200 702.2 408 87.5
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.3e-200 702.2 406 86.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.3e-200 702.2 404 87.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 3.0e-200 701.8 411 87.3
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 8.7e-200 700.3 406 87.2
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.1e-199 699.9 407 87.5
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 1.9e-199 699.1 419 85.0
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.9e-199 699.1 407 86.5
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.5e-199 698.7 404 87.6
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 5.7e-199 697.6 407 87.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 5.7e-199 697.6 404 86.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 7.4e-199 697.2 404 86.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-198 696.4 404 87.1
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.1e-198 695.7 402 86.1
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.1e-198 695.7 402 87.3
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 3.7e-198 694.9 405 86.7
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 4.8e-198 694.5 407 86.7
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 8.2e-198 693.7 406 86.9
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.4e-197 693.0 402 86.1
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.1e-197 691.8 402 85.8
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 4.1e-197 691.4 402 85.3
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.2e-196 689.9 413 82.8
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.2e-196 689.9 405 86.4
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.2e-196 689.9 403 84.9
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 3.4e-196 688.3 402 86.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 3.4e-196 688.3 402 86.3
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 4.5e-196 688.0 406 86.0
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 7.6e-196 687.2 407 85.5
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.3e-195 686.4 407 85.0
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.3e-195 686.4 405 84.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.3e-195 686.4 371 91.1
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 2.9e-195 685.3 405 85.7
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 3.8e-195 684.9 404 86.4
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 6.5e-195 684.1 357 94.1
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 8.4e-195 683.7 357 93.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 1.1e-194 683.3 403 84.9
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.4e-194 682.9 405 84.9
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.4e-194 682.9 405 84.9
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.9e-194 682.6 406 84.2
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 3.2e-194 681.8 409 84.1
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 3.2e-194 681.8 406 83.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.2e-194 681.8 409 84.1
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 4.2e-194 681.4 405 84.7
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 7.2e-194 680.6 416 83.4
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 9.3e-194 680.2 406 84.0
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.2e-193 679.9 403 83.9
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.6e-193 679.5 407 85.0
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.6e-193 679.5 407 85.0
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 2.1e-193 679.1 374 89.8
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 3.5e-193 678.3 404 84.7
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.0e-192 676.8 406 83.3
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-192 676.0 409 82.6
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.3e-192 675.6 404 83.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 3.0e-192 675.2 406 84.5
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 3.0e-192 675.2 409 82.9
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 3.0e-192 675.2 409 82.9
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 3.0e-192 675.2 409 83.4
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 3.9e-192 674.9 409 83.1
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 3.9e-192 674.9 409 83.1
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.9e-192 674.9 407 82.8
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 5.1e-192 674.5 409 82.9
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 8.7e-192 673.7 415 82.4
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 8.7e-192 673.7 411 84.4
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-191 673.3 409 82.6
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-191 672.9 409 83.1
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.5e-191 672.9 409 82.6
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.9e-191 672.5 404 83.4
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.6e-190 669.5 406 84.0
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.6e-190 669.5 425 81.2
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 3.7e-190 668.3 404 82.7
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.7e-190 668.3 400 84.0
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 4.8e-190 667.9 409 82.4
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 8.2e-190 667.2 380 87.4
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 1.4e-189 666.4 373 87.7
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.8e-189 666.0 402 82.8
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.8e-189 666.0 365 89.6
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 3.1e-189 665.2 406 82.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 4.1e-189 664.8 374 88.2
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 6.9e-189 664.1 425 81.6
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 2.0e-188 662.5 396 84.3
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-188 661.8 413 81.6
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.9e-188 661.0 408 82.1
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 5.0e-187 657.9 404 80.7
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.9e-186 656.0 380 84.5
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.1e-185 652.5 411 81.0
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 3.2e-178 628.6 333 91.3
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 5.1e-176 621.3 362 83.4
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.5e-175 619.8 368 81.5
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.3e-174 616.7 377 79.0
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 8.2e-174 614.0 365 81.1
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 7.0e-173 610.9 369 82.9
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.5e-170 601.3 403 76.7
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.6e-169 599.7 408 77.2
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 5.2e-160 568.2 397 74.1
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.1e-157 560.5 334 83.5
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.6e-151 539.3 320 85.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 4.4e-151 538.5 335 82.1
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.1e-149 533.9 353 72.2
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 5.4e-149 531.6 314 84.7
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 6.8e-144 514.6 353 69.1
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.2e-142 509.6 288 84.7
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 4.1e-141 505.4 304 83.2
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.2e-140 503.8 402 67.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 8.6e-139 497.7 345 70.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 7.5e-135 484.6 405 62.2
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.3e-134 483.8 299 82.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 6.0e-132 474.9 287 85.4
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 8.1e-129 464.5 248 90.7
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.1e-128 464.2 367 62.9
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.2e-119 434.1 305 73.1
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.5e-114 416.4 277 76.9
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.3e-102 377.5 242 75.2
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.8e-96 357.1 316 61.7
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 9.7e-58 228.4 132 83.3
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-57 228.0 132 82.6
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 3.2e-53 213.4 395 36.7
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.1e-48 198.4 118 81.4
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.4e-48 198.0 118 80.5
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.0e-42 177.6 104 83.7
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 9.8e-42 175.3 103 83.5
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 9.8e-42 175.3 103 83.5
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.5e-37 161.4 101 80.2
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 3.6e-36 156.8 94 80.9
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.8e-33 147.1 94 76.6
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 6.8e-27 125.9 98 71.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-26 125.2 105 65.7
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 7.5e-26 122.5 148 50.7
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.2e-24 115.5 71 73.2
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 5.0e-22 109.8 59 86.4
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 6.6e-22 109.4 62 90.3
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.7e-20 103.2 81 66.7
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-19 100.5 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 2.0e-18 97.8 59 81.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 1.1e-08 65.5 76 53.9
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.6e-07 60.1 53 60.4


User provided reference genes

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