Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 0.0e+00 2146.3 1218 100.0
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 2097.8 1254 96.0
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 2038.5 1225 91.4
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 0.0e+00 1860.9 1224 85.9
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 0.0e+00 1775.8 1232 82.6
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 0.0e+00 1293.5 1249 58.4
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 0.0e+00 1217.2 1255 56.5
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1091.6 1267 50.4
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 8.3e-312 1074.7 1287 49.0
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 4.2e-311 1071.6 1293 49.2
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 2.0e-308 1062.8 1272 49.1
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 2.8e-302 1042.3 1268 46.9
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 7.7e-300 1034.2 1263 48.1
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 8.8e-296 1020.8 1262 48.6
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 4.4e-295 1018.5 1271 47.4
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 4.8e-294 1015.0 1272 47.4
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 6.6e-291 1004.6 1262 47.6
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 3.0e-288 995.7 1269 46.3
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 1.8e-285 986.5 1297 45.6
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 3.1e-285 985.7 1259 46.9
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 2.0e-284 983.0 1240 47.9
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 1.4e-280 970.3 870 58.7
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 3.4e-279 965.7 1260 46.5
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 5.8e-279 964.9 1284 45.7
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 5.6e-274 948.3 1271 45.2
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.6e-273 946.8 1275 45.3
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 3.4e-271 939.1 1286 45.4
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 5.8e-271 938.3 853 57.4
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.2e-269 932.6 872 56.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 4.1e-269 932.2 1261 44.7
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 6.0e-268 928.3 872 55.8
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 3.1e-264 916.0 880 54.8
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-262 910.2 881 54.1
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 2.9e-262 909.4 1277 43.9
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.4e-261 907.1 908 53.4
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 1.7e-259 900.2 1272 44.6
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.5e-258 896.3 874 54.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 7.3e-258 894.8 1235 44.5
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 2.8e-257 892.9 882 53.7
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.4e-256 890.6 642 68.4
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.4e-256 890.6 1255 43.5
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.5e-255 887.1 874 54.3
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.9e-254 882.1 1302 41.9
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 4.9e-254 882.1 873 54.5
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 3.2e-253 879.4 1253 44.6
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 7.8e-252 874.8 1301 42.5
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.7e-251 873.6 1328 41.5
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 3.6e-249 865.9 1288 42.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.8e-248 863.6 1298 42.0
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 4.4e-247 859.0 1242 42.7
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 4.4e-247 859.0 1299 41.6
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 4.4e-247 859.0 1287 42.2
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 6.4e-246 855.1 1287 42.6
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.9e-245 853.6 1243 43.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.7e-244 849.7 1247 42.0
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 3.5e-244 849.4 881 52.8
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 5.1e-243 845.5 1228 43.6
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.5e-242 843.2 1264 41.8
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 5.6e-242 842.0 1199 44.1
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.1e-240 837.8 1295 42.5
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.1e-240 837.8 1225 41.2
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.5e-239 833.9 1308 40.7
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 4.5e-239 832.4 880 50.7
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.3e-238 830.9 1250 40.2
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.2e-238 830.1 875 51.2
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.9e-238 828.9 428 96.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.4e-237 826.6 1268 41.6
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.2e-236 824.3 1305 40.2
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 1.2e-236 824.3 1292 40.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.6e-236 823.9 1273 41.2
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 4.3e-234 815.8 1302 42.3
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 6.9e-232 808.5 857 51.0
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 1.5e-231 807.4 1247 41.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 2.6e-231 806.6 890 49.3
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 1.3e-230 804.3 1353 38.9
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.9e-229 800.4 1289 40.1
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.5e-229 800.0 1285 40.9
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.1e-228 797.0 1192 41.1
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.6e-228 795.8 1239 40.7
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.5e-226 790.0 1249 40.5
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 1.6e-225 787.3 875 49.0
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 6.2e-225 785.4 875 49.0
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.5e-223 780.8 1250 40.6
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.3e-222 777.7 882 49.4
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 3.8e-222 776.2 1261 39.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 8.4e-222 775.0 1270 40.1
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.4e-221 774.2 685 56.1
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.5e-221 773.5 1305 40.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 5.5e-221 772.3 1278 39.4
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 1.6e-220 770.8 1239 40.7
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 4.5e-215 752.7 630 59.7
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 7.2e-205 718.8 1181 40.1
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.8e-203 714.1 891 46.7
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 6.7e-203 712.2 923 45.7
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.1e-202 711.4 803 48.3
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 7.7e-199 698.7 874 47.6
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.1e-196 690.6 1286 38.5
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.1e-196 690.6 1286 38.5
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 6.1e-196 689.1 879 46.2
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.1e-189 668.3 1182 37.9
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.1e-189 668.3 794 46.7
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 6.1e-188 662.5 655 52.2
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.5e-186 657.9 716 51.3
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.8e-179 634.4 637 53.4
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.4e-176 624.0 815 44.4
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.1e-164 584.3 769 44.2
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 6.8e-155 552.7 508 57.9
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.1e-152 545.4 975 37.8
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.2e-143 515.4 766 41.3
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.1e-140 504.6 540 52.2
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 8.1e-140 502.7 538 52.6
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 3.5e-135 487.3 949 37.4
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.5e-114 418.7 639 39.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.2e-112 410.6 802 37.9
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 2.7e-111 407.9 802 37.8
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 6.3e-108 396.7 656 37.7
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 2.2e-100 371.7 336 56.5
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.5e-96 358.2 303 61.4
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 3.9e-94 350.9 315 58.7
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 5.0e-89 334.0 421 45.4
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 4.8e-84 317.4 266 57.5
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 2.0e-82 312.0 458 42.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.5e-80 305.1 604 36.6
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.6e-79 302.4 293 52.6
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.8e-68 265.0 407 36.9
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 2.1e-63 248.8 353 42.2
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 5.2e-38 164.5 534 28.3
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 3.7e-36 158.3 596 29.0
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 8.9e-30 137.1 270 35.2
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 2.0e-29 136.0 295 29.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 8.6e-25 120.6 247 33.2
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.2e-19 101.7 215 36.3
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.2e-10 73.6 58 62.1
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.1e-10 72.8 264 28.8
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.1e-08 67.0 121 41.3


User provided reference genes

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