Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 0.0e+00 1127.9 568 100.0
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 0.0e+00 1117.4 570 99.1
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 0.0e+00 1115.1 570 98.9
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 0.0e+00 1102.8 597 94.6
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 0.0e+00 1101.7 570 97.5
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 0.0e+00 1100.1 570 97.7
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 5.6e-301 1036.9 570 93.3
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 8.4e-257 890.2 577 80.4
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 5.4e-256 887.5 575 80.7
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 8.1e-252 873.6 569 77.3
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.8e-250 867.5 570 77.2
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.3e-249 866.3 575 77.6
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.1e-245 853.2 569 76.3
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 7.4e-245 850.5 570 76.3
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 7.4e-245 850.5 569 77.0
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 4.8e-244 847.8 569 76.1
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 6.2e-244 847.4 570 76.1
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.4e-243 846.3 569 76.6
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 5.8e-242 840.9 549 78.0
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 1.7e-241 839.3 571 75.5
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.7e-241 839.3 571 75.5
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 2.9e-241 838.6 574 74.7
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 4.9e-241 837.8 571 75.5
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.9e-240 835.9 572 75.2
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 7.1e-240 833.9 590 73.4
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 2.1e-239 832.4 571 75.8
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 2.1e-239 832.4 575 75.3
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 2.1e-239 832.4 569 75.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.5e-239 831.6 584 74.8
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.3e-238 829.7 584 74.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.8e-238 829.3 573 74.2
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 5.1e-238 827.8 574 75.4
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 6.7e-238 827.4 569 75.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 3.3e-237 825.1 573 73.8
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 4.8e-236 821.2 572 74.3
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 1.4e-235 819.7 569 74.0
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 1.8e-235 819.3 571 73.9
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 3.1e-235 818.5 572 73.6
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 9.0e-235 817.0 571 74.1
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.0e-233 813.5 516 82.2
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 1.9e-232 809.3 573 74.2
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.7e-231 805.4 575 72.7
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 4.6e-231 804.7 572 72.0
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 6.1e-231 804.3 568 73.4
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.4e-230 803.1 586 71.5
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 2.3e-230 802.4 570 73.9
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.0e-230 802.0 577 72.1
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 8.8e-230 800.4 572 73.6
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 8.8e-230 800.4 574 72.6
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 4.3e-229 798.1 573 74.0
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 2.8e-228 795.4 581 72.1
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 2.8e-228 795.4 574 73.5
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 4.8e-228 794.7 570 71.9
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 8.2e-228 793.9 574 73.2
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 2.4e-227 792.3 568 72.5
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 9.1e-227 790.4 570 71.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.4e-224 783.1 574 71.4
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.6e-223 779.6 570 70.2
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.4e-222 776.5 577 70.9
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 3.0e-222 775.4 570 70.5
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 2.2e-220 769.2 570 70.0
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.8e-220 768.8 570 70.2
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.8e-220 768.8 572 71.0
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.8e-220 768.8 570 70.0
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 6.9e-219 764.2 530 74.5
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.9e-217 758.8 575 70.3
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 5.0e-217 758.1 567 70.4
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 5.5e-216 754.6 584 70.4
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 8.0e-215 750.7 570 69.3
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 2.3e-214 749.2 572 68.5
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.3e-214 749.2 633 63.0
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.9e-214 748.4 578 68.7
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 2.0e-213 746.1 676 61.5
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.6e-213 745.7 575 68.9
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 3.3e-213 745.3 555 71.5
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.7e-212 743.0 569 70.3
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 2.4e-211 739.2 564 69.3
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 5.9e-210 734.6 590 66.6
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 7.7e-210 734.2 569 68.0
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 1.7e-209 733.0 570 67.9
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 4.2e-208 728.4 601 64.2
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 1.0e-206 723.8 570 67.0
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.3e-206 722.6 569 66.4
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 9.7e-205 717.2 567 66.5
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.8e-204 715.7 587 65.1
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 1.4e-203 713.4 558 67.0
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 1.4e-203 713.4 558 67.0
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 1.4e-203 713.4 558 67.0
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.8e-203 713.0 570 66.1
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.0e-201 707.2 563 67.7
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.3e-201 706.8 570 65.8
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.9e-201 705.7 572 64.7
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 5.0e-201 704.9 569 66.1
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 1.1e-200 703.7 558 66.3
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.5e-200 702.6 558 66.1
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 9.4e-200 700.7 569 67.8
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 4.0e-198 695.3 579 65.3
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 1.5e-197 693.3 737 53.3
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.4e-197 692.2 568 66.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 2.8e-196 689.1 502 72.1
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 5.4e-195 684.9 568 63.6
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.3e-193 679.5 508 69.9
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.3e-192 675.6 559 65.5
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 3.8e-185 652.1 546 64.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.8e-183 646.0 572 61.4
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 1.0e-182 644.0 418 78.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 6.8e-182 641.3 575 61.0
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 1.4e-174 617.1 489 65.6
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 2.0e-165 586.6 589 56.2
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 1.2e-141 507.7 387 69.3
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 7.6e-133 478.4 503 55.3
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 7.6e-133 478.4 503 55.3
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 7.6e-133 478.4 503 55.3
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 4.3e-128 462.6 586 49.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.1e-126 458.0 606 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.4e-118 431.0 489 52.8
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 6.9e-118 428.7 264 80.3
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.0e-116 422.5 351 64.4
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 1.5e-80 304.7 197 81.2
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-78 298.5 261 62.5
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 4.5e-77 293.1 238 65.5
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 4.2e-75 286.6 161 88.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 1.8e-73 281.2 354 48.0
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 3.0e-73 280.4 340 50.9
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 8.9e-73 278.9 553 39.6
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 7.5e-72 275.8 161 85.1
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 1.6e-66 258.1 165 77.0
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 6.8e-65 252.7 420 42.4
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 2.4e-62 244.2 273 52.7
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.0e-60 238.8 195 68.7
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 1.6e-53 214.9 190 62.1
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.3e-47 195.3 423 36.9
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 1.7e-47 194.9 134 70.1
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 8.6e-44 182.6 215 53.0
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 3.1e-41 174.1 116 78.4
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 8.9e-41 172.6 175 56.0
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 2.9e-39 167.5 113 75.2
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 9.3e-38 162.5 614 29.8
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 2.1e-37 161.4 214 46.7
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 6.4e-31 139.8 159 50.3
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 1.6e-26 125.2 68 86.8
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 6.9e-25 119.8 112 58.0
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 1.1e-22 112.5 96 57.3
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.9e-22 111.7 78 69.2
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.0e-20 105.9 185 38.9
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 5.1e-20 103.6 86 65.1
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 6.9e-17 93.2 117 48.7
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 1.2e-16 92.4 69 65.2
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 3.4e-16 90.9 68 70.6
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.0e-15 89.4 66 68.2
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.7e-15 88.6 58 72.4
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.6e-13 82.0 87 48.3
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 3.5e-13 80.9 70 54.3
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.6e-10 72.0 57 64.9
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 3.7e-10 70.9 49 71.4
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 4.5e-08 63.9 51 56.9
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 1.7e-07 62.0 51 54.9
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 2.9e-07 61.2 36 72.2
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.5e-07 60.1 64 53.1


User provided reference genes

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