Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g06762 Fragaria vesca HOM05D000113 ORTHO05D196630 1.8e-34 148.7 75 100.0
Os08g0335000 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D002571 5.3e-10 67.4 82 50.0
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 1.5e-07 59.3 33 84.8
Atru.chr12.1785 Acer truncatum HOM05D000113 ORTHO05D002571 3.2e-07 58.2 50 62.0
Ciclev10019101m.g Citrus clementina HOM05D000113 ORTHO05D002571 3.2e-07 58.2 50 62.0
Mapoly0054s0103 Marchantia polymorpha HOM05D000113 ORTHO05D002571 3.2e-07 58.2 49 65.3
Atru.chr11.2088 Acer truncatum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 49 63.3
CAN.G479.25 Capsicum annuum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Cpa.g.sc94.15 Carica papaya HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Cfa019308 Carpinus fangiana HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
CiPaw.11G050600 Carya illinoinensis HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Haze_07691 Corylus avellana HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
FvH4_5g14240 Fragaria vesca HOM05D000113 ORTHO05D002571 5.5e-07 57.4 50 62.0
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.5e-07 57.4 50 62.0
FAN18G0690 Fragaria x ananassa HOM05D000113 ORTHO05D002571 5.5e-07 57.4 50 62.0
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Lsat_1_v5_gn_9_24861 Lactuca sativa HOM05D000113 ORTHO05D002571 5.5e-07 57.4 49 59.2
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
RcHm_v2.0_Chr7g0182681 Rosa chinensis HOM05D000113 ORTHO05D002571 5.5e-07 57.4 50 62.0
Solyc03g115390.4 Solanum lycopersicum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 5.5e-07 57.4 29 89.7
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 7.2e-07 57.0 29 89.7
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 7.2e-07 57.0 29 89.7
MD07G1285300 Malus domestica HOM05D000113 ORTHO05D002571 7.2e-07 57.0 29 89.7
MD08G1042900 Malus domestica HOM05D000113 ORTHO05D002571 7.2e-07 57.0 29 89.7
Nitab4.5_0001127g0100 Nicotiana tabacum HOM05D000113 ORTHO05D000028 7.2e-07 57.0 29 86.2
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 7.2e-07 57.0 29 89.7
TAR374G0561 Trochodendron aralioides HOM05D000113 ORTHO05D002571 7.2e-07 57.0 29 89.7
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 9.4e-07 56.6 28 92.9
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 9.4e-07 56.6 28 92.9
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 9.4e-07 56.6 28 92.9
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 9.4e-07 56.6 29 89.7
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 9.4e-07 56.6 28 92.9
TWI81G1049 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 9.4e-07 56.6 33 78.8
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 9.4e-07 56.6 28 92.9
ECA238G0411 Erigeron canadensis HOM05D000113 ORTHO05D002571 1.2e-06 56.2 29 86.2
TWI73G0006 Tripterygium wilfordii HOM05D000113 ORTHO05D002571 1.2e-06 56.2 29 86.2
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
ATR0064G016 Amborella trichopoda HOM05D000113 ORTHO05D002571 1.6e-06 55.8 49 59.2
Cfa004955 Carpinus fangiana HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
AUR62033485 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.6e-06 55.8 49 61.2
AUR62037497 Chenopodium quinoa HOM05D000113 ORTHO05D002571 1.6e-06 55.8 49 61.2
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Lalb_Chr13g0294241 Lupinus albus HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Nn2g13470 Nelumbo nucifera HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Prupe.8G103900 Prunus persica HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Prupe.8G104500 Prunus persica HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Rhsim06G0025800 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 1.6e-06 55.8 29 86.2
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 1.6e-06 55.8 40 67.5
Ciclev10023841m.g Citrus clementina HOM05D000113 ORTHO05D002571 2.1e-06 55.5 29 86.2
DCAR_021511 Daucus carota HOM05D000113 ORTHO05D002571 2.1e-06 55.5 28 89.3
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 2.1e-06 55.5 28 89.3
Migut.G00488 Erythranthe guttata HOM05D000113 ORTHO05D002571 2.1e-06 55.5 28 89.3
HanXRQChr09g0270171 Helianthus annuus HOM05D000113 ORTHO05D002571 2.1e-06 55.5 28 89.3
Lj1g0013131 Lotus japonicus HOM05D000113 ORTHO05D002571 2.1e-06 55.5 29 86.2
Nitab4.5_0004622g0020 Nicotiana tabacum HOM05D000113 ORTHO05D002571 2.1e-06 55.5 29 82.8
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 2.1e-06 55.5 29 86.2
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 2.1e-06 55.5 29 86.2
SMO356G0256 Selaginella moellendorffii HOM05D000113 ORTHO05D002571 2.1e-06 55.5 28 89.3
CDE02G1863 Ceratophyllum demersum HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 89.3
AUR62011095 Chenopodium quinoa HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 89.3
DCAR_026352 Daucus carota HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 85.7
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 89.3
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 85.7
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 89.3
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 2.7e-06 55.1 29 86.2
SEGI_12748 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 2.7e-06 55.1 49 59.2
SEGI_38462 Sequoiadendron giganteum HOM05D000113 ORTHO05D002571 2.7e-06 55.1 49 59.2
THA.LOC104812748 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 2.7e-06 55.1 28 89.3
Ah.13g072960 Amaranthus hybridus HOM05D000113 ORTHO05D002571 3.6e-06 54.7 50 58.0
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 3.6e-06 54.7 72 45.8
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 3.6e-06 54.7 29 82.8
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 3.6e-06 54.7 29 82.8
Haze_02454 Corylus avellana HOM05D000113 ORTHO05D002571 3.6e-06 54.7 29 82.8
Gohir.D04G183400 Gossypium hirsutum HOM05D000113 ORTHO05D002571 3.6e-06 54.7 29 82.8
Gorai.012G176400 Gossypium raimondii HOM05D000113 ORTHO05D002571 3.6e-06 54.7 29 82.8
Oeu027144.1 Olea europaea HOM05D000113 ORTHO05D002571 3.6e-06 54.7 28 89.3
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
BcaB03g13728 Brassica carinata HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
BcaB06g29390 Brassica carinata HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
Carub.0004s1703 Capsella rubella HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
CARHR129490 Cardamine hirsuta HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
HanXRQChr10g0308651 Helianthus annuus HOM05D000113 ORTHO05D002571 4.7e-06 54.3 28 85.7
HanXRQChr16g0516051 Helianthus annuus HOM05D000113 ORTHO05D002571 4.7e-06 54.3 28 85.7
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
QL10p018828 Quercus lobata HOM05D000113 ORTHO05D002571 4.7e-06 54.3 28 89.3
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
Sp4g17550 Schrenkiella parvula HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 4.7e-06 54.3 29 82.8
Atru.chr3.559 Acer truncatum HOM05D000113 ORTHO05D002571 6.1e-06 53.9 49 59.2
A04p33610 Brassica napus HOM05D000113 ORTHO05D002571 6.1e-06 53.9 29 82.8
BraA04t18824Z Brassica rapa HOM05D000113 ORTHO05D002571 6.1e-06 53.9 29 82.8
DCAR_003986 Daucus carota HOM05D000113 ORTHO05D002571 6.1e-06 53.9 28 85.7
DCAR_003991 Daucus carota HOM05D000113 ORTHO05D002571 6.1e-06 53.9 28 85.7
ECA232G2775 Erigeron canadensis HOM05D000113 ORTHO05D002571 6.1e-06 53.9 28 85.7
ECA248G2100 Erigeron canadensis HOM05D000113 ORTHO05D002571 6.1e-06 53.9 28 85.7
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 6.1e-06 53.9 29 82.8
Lj5C105T19 Lonicera japonica HOM05D000113 ORTHO05D002571 6.1e-06 53.9 28 85.7
Sed0002514 Sechium edule HOM05D000113 ORTHO05D002571 6.1e-06 53.9 28 85.7
Zm00001eb176340 Zea mays HOM05D000113 ORTHO05D002571 6.1e-06 53.9 49 59.2
AagrBONN_evm.TU.Sc2ySwM_228.1831 Anthoceros agrestis HOM05D000113 ORTHO05D002571 8.0e-06 53.5 27 88.9
CBR_g24329 Chara braunii HOM05D000113 ORTHO05D002571 8.0e-06 53.5 32 78.1
Ca_23233_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 8.0e-06 53.5 28 85.7
Ca_26393_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 8.0e-06 53.5 28 85.7
SGA_v2.0_scaffold7G04034 Striga asiatica HOM05D000113 ORTHO05D002571 8.0e-06 53.5 28 85.7
TPR.G39341 Trifolium pratense HOM05D000113 ORTHO05D002571 8.0e-06 53.5 28 85.7


User provided reference genes

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