Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.8e-233 811.6 414 100.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.0e-232 807.7 414 99.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.4e-229 798.5 414 98.3
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.2e-229 798.1 414 98.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.8e-224 780.4 414 95.2
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 8.7e-211 736.9 414 89.1
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.6e-207 725.3 414 87.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 2.9e-206 721.8 414 87.2
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.0e-203 713.4 414 86.2
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.8e-200 702.6 414 85.3
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.4e-200 702.2 410 84.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 7.6e-199 697.2 416 83.9
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.3e-198 696.4 414 84.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.7e-198 696.0 414 84.3
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.7e-198 696.0 414 83.6
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.9e-198 695.3 414 83.8
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.9e-198 695.3 414 83.8
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 83.6
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 3.2e-197 691.8 414 82.9
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 1.6e-196 689.5 414 83.3
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.5e-196 688.3 409 84.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 4.6e-196 688.0 414 83.8
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 6.7e-195 684.1 414 83.6
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.9e-194 682.6 412 82.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 82.1
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 7.4e-194 680.6 414 81.6
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.6
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 81.2
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 81.2
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 2.8e-193 678.7 414 80.9
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 8.1e-193 677.2 413 81.8
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.4e-192 676.4 414 80.9
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.8e-192 676.0 411 81.8
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.8e-192 676.0 412 82.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.4e-192 675.6 414 81.4
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.0e-192 674.9 413 83.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 5.3e-192 674.5 414 81.4
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 9.0e-192 673.7 414 81.4
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 81.6
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.5e-191 672.9 445 78.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 81.2
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 80.9
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 80.4
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 5.8e-191 671.0 414 80.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.0e-190 670.2 409 80.4
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.3e-190 669.8 411 81.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 6.5e-190 667.5 411 81.3
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 6.5e-190 667.5 413 79.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 8.4e-190 667.2 414 80.4
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.4e-189 666.4 414 80.2
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.9e-189 666.0 414 79.7
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.5e-189 664.5 426 78.6
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 9.3e-189 663.7 426 78.6
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 9.3e-189 663.7 426 78.6
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-188 662.9 414 79.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 79.2
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.7e-188 662.1 413 80.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 6.0e-188 661.0 416 80.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.0e-187 660.2 414 79.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.3e-187 659.8 414 79.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.3e-187 659.8 417 81.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.8e-187 659.4 414 79.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.8e-187 659.4 409 81.9
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 1.8e-187 659.4 413 78.5
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 3.0e-187 658.7 413 79.9
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.1e-187 657.9 414 79.0
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.3e-186 655.2 413 79.9
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.6e-185 652.9 413 78.7
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.1e-184 650.2 413 79.7
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.6e-183 645.6 414 78.7
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 5.8e-183 644.4 414 77.1
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 5.0e-182 641.3 410 79.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.5e-182 641.0 411 78.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.1e-181 640.2 413 77.7
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.9e-181 639.4 413 76.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.2e-181 638.3 414 77.1
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 9.3e-181 637.1 413 76.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 3.5e-180 635.2 411 76.9
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 6.1e-180 634.4 415 77.8
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.3e-179 632.5 438 74.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.5e-178 629.0 420 75.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 7.4e-178 627.5 420 75.5
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.2e-177 625.9 413 73.1
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.8e-176 622.9 416 76.0
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.0e-174 617.1 414 76.6
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.2e-174 615.9 429 73.4
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.4e-173 613.2 415 74.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 9.4e-173 610.5 415 74.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.6e-172 608.6 371 81.9
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.6e-172 608.2 375 81.1
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.3e-170 601.7 415 72.8
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.3e-168 594.7 406 74.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.9e-165 586.3 410 73.4
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 7.9e-164 580.9 414 71.7
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 8.2e-161 570.9 371 79.2
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.4e-160 570.1 412 71.8
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-159 566.2 418 69.9
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.5e-159 565.5 410 69.5
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 7.7e-159 564.3 410 67.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.0e-155 553.9 325 85.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.3e-154 548.9 485 63.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-152 543.9 294 95.2
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-152 543.9 294 95.2
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.1e-148 528.1 411 67.6
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 4.0e-147 525.4 398 65.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.0e-142 510.8 405 60.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 4.0e-139 498.8 412 60.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 5.7e-138 495.0 305 79.7
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.5e-133 480.3 296 79.1
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 7.3e-125 451.4 257 87.5
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.8e-115 418.3 313 68.4
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 1.7e-113 413.7 314 68.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 2.9e-113 412.9 256 78.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.5e-109 399.8 285 69.8
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 7.8e-103 378.3 284 68.0
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 8.6e-102 374.8 301 68.4
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.0e-99 365.9 409 48.2
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.9e-88 330.5 191 86.9
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.4e-80 304.3 238 66.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.4e-75 287.7 205 71.2
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.5e-74 284.3 184 74.5
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.6e-74 282.0 199 71.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 5.1e-70 269.2 173 78.0
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.0e-65 252.7 204 66.2
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.0e-62 245.0 220 60.0
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.5e-61 241.1 404 35.4
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.5e-58 231.1 131 88.5
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.9e-56 224.2 321 37.1
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.6e-55 221.1 400 33.0
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.2e-52 208.8 126 80.2
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-47 194.1 199 56.8
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 4.4e-45 186.4 121 70.2
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-44 184.1 161 62.7
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.2e-44 182.2 177 57.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.7e-39 167.2 102 75.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.8e-38 164.5 414 31.9
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 7.5e-37 159.1 114 67.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-33 147.5 83 81.9
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.6e-31 140.2 106 63.2
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.1e-31 139.4 80 81.2
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-28 131.7 117 65.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.2e-20 104.4 101 62.4
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.4e-19 101.7 51 98.0
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 3.5e-18 97.1 143 46.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 5.9e-18 96.3 127 52.0
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 3.3e-16 90.5 146 45.2
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.6e-15 88.2 154 38.3
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.0e-14 85.5 54 88.9
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.5e-13 79.3 71 59.2
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.7e-12 77.0 50 76.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.5e-10 70.5 57 63.2
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 3.0e-09 67.4 40 85.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 3.9e-09 67.0 82 47.6


User provided reference genes

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