Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.4e-262 909.1 464 100.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 9.6e-251 869.8 463 96.3
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.6e-248 860.1 463 96.1
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.4e-243 843.6 468 94.0
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.1e-193 678.3 492 76.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 2.1e-160 569.7 475 66.9
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 6.6e-159 564.7 350 85.1
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 2.6e-139 499.6 484 60.1
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 8.4e-130 468.0 483 57.6
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 7.9e-128 461.5 483 55.9
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.3e-119 434.1 487 54.8
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.8e-116 423.7 481 53.4
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 7.6e-115 418.3 483 50.7
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 2.3e-111 406.8 517 49.7
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.5e-110 404.1 490 50.8
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 1.4e-108 397.5 502 48.8
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.8e-108 397.1 479 50.9
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.9e-105 387.1 484 51.0
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.6e-104 382.9 490 49.0
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 3.6e-104 382.9 483 48.9
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 4.6e-104 382.5 445 52.4
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 3.3e-102 376.3 453 51.2
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 4.8e-101 372.5 485 49.9
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 6.9e-100 368.6 549 45.7
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 6.9e-100 368.6 496 48.2
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.2e-98 363.6 546 45.1
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 6.5e-98 362.1 588 43.7
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 7.2e-97 358.6 414 50.2
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 7.2e-97 358.6 511 47.2
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 1.2e-96 357.8 486 48.4
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.0e-95 354.8 478 48.1
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 5.7e-94 349.0 527 45.5
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 7.4e-94 348.6 538 45.5
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.7e-93 347.4 479 45.9
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 2.8e-93 346.7 495 48.3
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 5.3e-92 342.4 488 48.6
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 3.8e-90 336.3 453 47.9
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.6e-88 330.9 536 44.2
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 3.6e-88 329.7 483 47.6
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 8.0e-88 328.6 494 46.6
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.3e-87 327.0 496 46.4
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 3.0e-87 326.6 491 44.6
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 8.8e-87 325.1 339 55.5
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 1.1e-86 324.7 260 65.0
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 3.7e-85 319.7 493 43.6
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 8.2e-85 318.5 448 44.6
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 9.1e-84 315.1 501 41.7
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.6e-83 314.3 475 44.6
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 3.5e-83 313.2 444 47.1
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.0e-82 311.6 591 39.9
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.9e-82 310.1 530 42.5
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 5.0e-82 309.3 485 46.8
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 2.5e-81 307.0 591 39.1
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 9.4e-81 305.1 516 40.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.2e-80 304.7 546 41.6
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 6.1e-80 302.4 498 41.8
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 6.1e-80 302.4 542 40.8
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.4e-79 301.2 542 40.6
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.8e-79 300.8 253 59.7
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 6.8e-79 298.9 565 37.9
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.6e-78 297.0 556 40.3
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 3.4e-78 296.6 228 64.0
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 5.7e-78 295.8 496 42.5
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 5.7e-78 295.8 496 42.5
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 7.5e-78 295.4 629 35.5
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.7e-77 294.3 548 40.3
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.8e-77 293.5 496 42.3
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 2.4e-76 290.4 320 53.8
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 5.4e-76 289.3 471 43.5
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 2.0e-75 287.3 467 43.0
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.5e-75 286.6 435 41.6
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 7.7e-75 285.4 493 40.8
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 7.7e-75 285.4 483 41.8
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.2e-74 283.9 483 41.4
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 5.0e-74 282.7 477 41.7
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 8.5e-74 282.0 534 40.3
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 1.1e-73 281.6 506 40.9
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.5e-73 281.2 482 41.7
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.2e-73 280.0 670 34.5
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 5.5e-73 279.3 480 40.4
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 5.5e-73 279.3 263 58.2
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 2.7e-72 276.9 456 41.7
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.2e-70 271.6 512 38.9
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.2e-70 271.6 218 60.1
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.0e-70 270.8 478 40.2
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.4e-70 269.6 475 41.1
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.7e-69 267.7 265 54.7
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.7e-67 260.4 591 34.3
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 5.9e-67 259.2 370 44.1
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.7e-66 257.7 354 43.2
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 3.8e-66 256.5 494 38.5
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 5.0e-66 256.1 385 43.6
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 5.0e-66 256.1 471 38.6
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 5.2e-63 246.1 378 42.6
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 5.2e-63 246.1 378 42.6
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.5e-62 244.6 416 38.7
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.3e-61 241.5 247 55.5
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.7e-61 241.1 474 39.5
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 4.1e-60 236.5 303 47.2
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.2e-59 235.0 263 49.8
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 1.6e-59 234.6 451 38.6
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 3.9e-58 229.9 381 41.2
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 5.0e-58 229.6 381 40.9
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.1e-57 228.4 468 37.2
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.1e-57 228.4 277 47.7
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-57 228.4 323 48.3
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.9e-57 227.6 183 61.7
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 1.6e-56 224.6 271 46.1
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 3.6e-56 223.4 319 43.9
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.2e-56 222.6 268 50.7
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.9e-53 213.0 480 37.5
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 9.2e-52 208.8 337 40.7
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 9.5e-49 198.7 281 45.2
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 9.5e-49 198.7 277 45.5
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 7.1e-44 182.6 249 39.0
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 3.0e-42 177.2 247 40.1
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 5.1e-42 176.4 246 37.8
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.4e-36 158.3 249 36.5
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 5.6e-33 146.4 111 72.1
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.5e-25 121.7 272 32.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.8e-22 109.8 255 30.2
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 5.4e-20 103.2 265 34.7
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.0e-18 97.4 75 57.3
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 9.0e-15 85.9 175 42.3
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 9.9e-14 82.4 66 48.5
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 3.5e-11 73.9 70 54.3
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 1.9e-09 68.2 327 27.8


User provided reference genes

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