Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1936 Fragaria x ananassa HOM05D002781 ORTHO05D022740 3.5e-58 228.0 110 100.0
FAN24G3093 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.3e-41 172.9 104 84.6
FvH4_2g15870 Fragaria vesca HOM05D002781 ORTHO05D003382 4.3e-40 167.9 104 82.7
FAN24G1470 Fragaria x ananassa HOM05D002781 ORTHO05D003382 4.3e-40 167.9 104 82.7
RcHm_v2.0_Chr6g0312531 Rosa chinensis HOM05D002781 ORTHO05D003382 8.1e-23 110.5 109 60.6
Sc19g0002420 Simmondsia chinensis HOM05D002781 ORTHO05D003382 8.1e-23 110.5 106 52.8
MSTRG.13933 Avicennia marina HOM05D002781 ORTHO05D003382 1.1e-22 110.2 113 54.9
Psat6g026040 Pisum sativum HOM05D002781 ORTHO05D003382 1.8e-22 109.4 112 54.5
Medtr1g014140 Medicago truncatula HOM05D002781 ORTHO05D003382 3.1e-22 108.6 113 53.1
Glyma.14G101500 Glycine max HOM05D002781 ORTHO05D003382 4.0e-22 108.2 112 53.6
RcHm_v2.0_Chr6g0278871 Rosa chinensis HOM05D002781 ORTHO05D003382 4.0e-22 108.2 97 66.0
SGA_v2.0_scaffold20G09307 Striga asiatica HOM05D002781 ORTHO05D003382 5.2e-22 107.8 113 54.9
TPR.G30251 Trifolium pratense HOM05D002781 ORTHO05D003382 5.2e-22 107.8 113 53.1
ClCG05G017340 Citrullus lanatus HOM05D002781 ORTHO05D003382 6.8e-22 107.5 113 53.1
Haze_21649 Corylus avellana HOM05D002781 ORTHO05D003382 8.9e-22 107.1 110 57.3
CsaV3_3G046850 Cucumis sativus L. HOM05D002781 ORTHO05D003382 8.9e-22 107.1 112 53.6
Oeu019276.1 Olea europaea HOM05D002781 ORTHO05D003382 8.9e-22 107.1 113 53.1
Actinidia03329 Actinidia chinensis HOM05D002781 ORTHO05D003382 1.2e-21 106.7 113 53.1
Lj6A614T28 Lonicera japonica HOM05D002781 ORTHO05D003382 1.2e-21 106.7 113 53.1
CDE02G0432 Ceratophyllum demersum HOM05D002781 ORTHO05D003382 1.5e-21 106.3 112 52.7
CDE09G0887 Ceratophyllum demersum HOM05D002781 ORTHO05D003382 1.5e-21 106.3 112 53.6
Actinidia25730 Actinidia chinensis HOM05D002781 ORTHO05D003382 2.0e-21 105.9 113 52.2
arahy.Tifrunner.gnm1.ann1.478ZG4 Arachis hypogaea HOM05D002781 ORTHO05D003382 2.6e-21 105.5 113 54.0
arahy.Tifrunner.gnm1.ann1.FW1LZ6 Arachis hypogaea HOM05D002781 ORTHO05D003382 2.6e-21 105.5 113 54.0
Ca_13063_v3 Cicer arietinum L. HOM05D002781 ORTHO05D003382 2.6e-21 105.5 112 53.6
Ca_25166_v3 Cicer arietinum L. HOM05D002781 ORTHO05D003382 2.6e-21 105.5 112 51.8
MELO3C003651.2 Cucumis melo HOM05D002781 ORTHO05D003382 2.6e-21 105.5 112 52.7
Glyma.17G223600 Glycine max HOM05D002781 ORTHO05D003382 3.4e-21 105.1 112 52.7
Migut.E01411 Erythranthe guttata HOM05D002781 ORTHO05D003382 4.4e-21 104.8 113 53.1
Lj5g0001123 Lotus japonicus HOM05D002781 ORTHO05D003382 5.8e-21 104.4 113 53.1
Oeu014115.1 Olea europaea HOM05D002781 ORTHO05D003382 7.6e-21 104.0 113 50.4
Rhsim07G0171600 Rhododendron simsii HOM05D002781 ORTHO05D003382 7.6e-21 104.0 108 54.6
Sed0018818 Sechium edule HOM05D002781 ORTHO05D003382 7.6e-21 104.0 110 53.6
MD08G1134400 Malus domestica HOM05D002781 ORTHO05D003382 9.9e-21 103.6 111 55.0
MD15G1113400 Malus domestica HOM05D002781 ORTHO05D003382 9.9e-21 103.6 111 55.0
Sed0013692 Sechium edule HOM05D002781 ORTHO05D003382 9.9e-21 103.6 110 52.7
FvH4_2g30550 Fragaria vesca HOM05D002781 ORTHO05D003382 1.3e-20 103.2 109 56.0
FAN24G1450 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.3e-20 103.2 109 56.0
FAN27G0558 Fragaria x ananassa HOM05D002781 ORTHO05D003382 1.3e-20 103.2 109 56.0
VMungo0647G0806 Vigna mungo HOM05D002781 ORTHO05D003382 1.3e-20 103.2 112 50.9
Eucgr.K02027 Eucalyptus grandis HOM05D002781 ORTHO05D003382 1.7e-20 102.8 113 50.4
PGR044G1761 Punica granatum HOM05D002781 ORTHO05D003382 1.7e-20 102.8 113 54.0
SalBow8G0076 Salvia bowleyana HOM05D002781 ORTHO05D003382 1.7e-20 102.8 110 52.7
TAR383G0197 Trochodendron aralioides HOM05D002781 ORTHO05D003382 1.7e-20 102.8 113 53.1
Peaxi162Scf00619g00214 Petunia axillaris HOM05D002781 ORTHO05D003382 2.2e-20 102.4 114 49.1
Prupe.1G463800 Prunus persica HOM05D002781 ORTHO05D003382 2.2e-20 102.4 108 56.5
SGA_v2.0_scaffold17G08122 Striga asiatica HOM05D002781 ORTHO05D003382 2.2e-20 102.4 110 50.9
Thecc.09G000700 Theobroma cacao HOM05D002781 ORTHO05D003382 2.2e-20 102.4 112 51.8
Dinv09454 Davidia involucrata HOM05D002781 ORTHO05D003382 2.9e-20 102.1 112 52.7
Hma1.2p1_1470F.1_g285580 Hydrangea macrophylla HOM05D002781 ORTHO05D003382 2.9e-20 102.1 113 51.3
Solyc05g056250.3 Solanum lycopersicum HOM05D002781 ORTHO05D003382 2.9e-20 102.1 114 50.9
Sopen05g034640 Solanum pennellii HOM05D002781 ORTHO05D003382 2.9e-20 102.1 114 50.9
Lalb_Chr04g0248401 Lupinus albus HOM05D002781 ORTHO05D003382 3.8e-20 101.7 114 54.4
PSO478G0309 Papaver somniferum HOM05D002781 ORTHO05D003382 3.8e-20 101.7 113 50.4
SGA_v2.0_scaffold17G08116 Striga asiatica HOM05D002781 ORTHO05D003382 3.8e-20 101.7 121 48.8
FAN20G1456 Fragaria x ananassa HOM05D002781 ORTHO05D003382 4.9e-20 101.3 109 55.0
Phvul.001G030000 Phaseolus vulgaris HOM05D002781 ORTHO05D003382 4.9e-20 101.3 112 49.1
TPR.G3453 Trifolium pratense HOM05D002781 ORTHO05D003382 4.9e-20 101.3 110 52.7
SalBow1G1421 Salvia bowleyana HOM05D002781 ORTHO05D003382 6.4e-20 100.9 113 51.3
SalBow1G4615 Salvia bowleyana HOM05D002781 ORTHO05D003382 6.4e-20 100.9 113 51.3
CANSAT78G1421 Cannabis sativa HOM05D002781 ORTHO05D003382 8.4e-20 100.5 110 53.6
Nitab4.5_0000080g0320 Nicotiana tabacum HOM05D002781 ORTHO05D003382 8.4e-20 100.5 114 49.1
SalBow1G0367 Salvia bowleyana HOM05D002781 ORTHO05D003382 8.4e-20 100.5 113 50.4
unitig_0.g2193 Utricularia gibba HOM05D002781 ORTHO05D003382 8.4e-20 100.5 113 53.1
CiPaw.07G216300 Carya illinoinensis HOM05D002781 ORTHO05D003382 1.1e-19 100.1 112 51.8
Lalb_Chr10g0107001 Lupinus albus HOM05D002781 ORTHO05D003382 1.1e-19 100.1 114 53.5
Nn4g24942 Nelumbo nucifera HOM05D002781 ORTHO05D003382 1.1e-19 100.1 113 48.7
unitig_747.g21377 Utricularia gibba HOM05D002781 ORTHO05D003382 1.1e-19 100.1 113 52.2
vmacro05095 Vaccinium macrocarpon HOM05D002781 ORTHO05D003382 1.4e-19 99.8 113 50.4
Nitab4.5_0001449g0030 Nicotiana tabacum HOM05D002781 ORTHO05D003382 1.9e-19 99.4 114 48.2
PSO017G0307 Papaver somniferum HOM05D002781 ORTHO05D003382 1.9e-19 99.4 113 49.6
Gohir.A07G001200 Gossypium hirsutum HOM05D002781 ORTHO05D003382 2.4e-19 99.0 109 53.2
Gohir.D07G001600 Gossypium hirsutum HOM05D002781 ORTHO05D003382 2.4e-19 99.0 109 53.2
Gorai.001G001300 Gossypium raimondii HOM05D002781 ORTHO05D003382 2.4e-19 99.0 109 53.2
Rhsim07G0113300 Rhododendron simsii HOM05D002781 ORTHO05D003382 2.4e-19 99.0 108 50.9
SEGI_02968 Sequoiadendron giganteum HOM05D002781 ORTHO05D003382 2.4e-19 99.0 112 49.1
TWI34G0804 Tripterygium wilfordii HOM05D002781 ORTHO05D003382 2.4e-19 99.0 114 50.0
Atru.chr7.2704 Acer truncatum HOM05D002781 ORTHO05D003382 3.2e-19 98.6 108 54.6
TWI63G0346 Tripterygium wilfordii HOM05D002781 ORTHO05D003382 3.2e-19 98.6 114 50.9
GSVIVG01035583001 Vitis vinifera HOM05D002781 ORTHO05D003382 3.2e-19 98.6 107 52.3
Aqoxy7G02657 Aquilegia oxysepala HOM05D002781 ORTHO05D003382 4.1e-19 98.2 113 49.6
Rhsim07G0113700 Rhododendron simsii HOM05D002781 ORTHO05D003382 4.1e-19 98.2 108 50.9
AagrBONN_evm.TU.Sc2ySwM_228.801 Anthoceros agrestis HOM05D002781 ORTHO05D003382 5.4e-19 97.8 108 51.9
Duzib168G0624 Durio zibethinus HOM05D002781 ORTHO05D003382 5.4e-19 97.8 109 51.4
HanXRQChr11g0342691 Helianthus annuus HOM05D002781 ORTHO05D003382 5.4e-19 97.8 114 45.6
TAR626G1626 Trochodendron aralioides HOM05D002781 ORTHO05D003382 5.4e-19 97.8 113 49.6
Potri.006G085400 Populus trichocarpa HOM05D002781 ORTHO05D003382 7.1e-19 97.4 113 49.6
arahy.Tifrunner.gnm1.ann1.V530VD Arachis hypogaea HOM05D002781 ORTHO05D003382 9.2e-19 97.1 113 49.6
SEGI_10721 Sequoiadendron giganteum HOM05D002781 ORTHO05D003382 9.2e-19 97.1 112 48.2
AT4G26870 Arabidopsis thaliana HOM05D002781 ORTHO05D003382 1.2e-18 96.7 109 47.7
HPP92_010423 Vanilla planifolia HOM05D002781 ORTHO05D003382 1.2e-18 96.7 108 50.0
Manes.02G204300 Manihot esculenta HOM05D002781 ORTHO05D003382 1.6e-18 96.3 110 49.1
CAN.G1921.4 Capsicum annuum HOM05D002781 ORTHO05D003382 2.1e-18 95.9 114 50.0
AUR62023712 Chenopodium quinoa HOM05D002781 ORTHO05D003382 2.1e-18 95.9 109 46.8
ECA248G0538 Erigeron canadensis HOM05D002781 ORTHO05D003382 2.1e-18 95.9 110 46.4
Ah.13g073200 Amaranthus hybridus HOM05D002781 ORTHO05D003382 2.7e-18 95.5 109 49.5
Lsat_1_v5_gn_1_72341 Lactuca sativa HOM05D002781 ORTHO05D003382 3.5e-18 95.1 109 45.9
Ciclev10004669m.g Citrus clementina HOM05D002781 ORTHO05D003382 4.6e-18 94.7 111 49.5
Manes.18G112500 Manihot esculenta HOM05D002781 ORTHO05D003382 4.6e-18 94.7 109 49.5
Nn8g41173 Nelumbo nucifera HOM05D002781 ORTHO05D003382 4.6e-18 94.7 113 47.8
arahy.Tifrunner.gnm1.ann1.P264ZS Arachis hypogaea HOM05D002781 ORTHO05D003382 6.0e-18 94.4 107 51.4
COL.COLO4_18646 Corchorus olitorius HOM05D002781 ORTHO05D003382 6.0e-18 94.4 112 50.9
Cc11_g01270 Coffea canephora HOM05D002781 ORTHO05D003382 7.8e-18 94.0 105 53.3
CSS0040336 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 1.3e-17 93.2 114 48.2
Migut.E00796 Erythranthe guttata HOM05D002781 ORTHO05D003382 1.3e-17 93.2 110 48.2
Eucgr.C03981 Eucalyptus grandis HOM05D002781 ORTHO05D003382 1.7e-17 92.8 125 44.8
Carub.0007s0935 Capsella rubella HOM05D002781 ORTHO05D003382 2.3e-17 92.4 113 46.0
AL7G20890 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 3.0e-17 92.0 112 46.4
DCAR_027376 Daucus carota HOM05D002781 ORTHO05D003382 3.0e-17 92.0 110 47.3
Mapoly0132s0010 Marchantia polymorpha HOM05D002781 ORTHO05D003382 3.0e-17 92.0 112 45.5
Cfa013226 Carpinus fangiana HOM05D002781 ORTHO05D003382 3.9e-17 91.7 110 51.8
ATR0626G153 Amborella trichopoda HOM05D002781 ORTHO05D003382 5.1e-17 91.3 112 48.2
BcaC09g51686 Brassica carinata HOM05D004115 ORTHO05D005004 5.1e-17 91.3 107 46.7
Pp3c21_10900 Physcomitrium patens HOM05D002781 ORTHO05D003382 5.1e-17 91.3 112 46.4
Hund22584 Selenicereus undatus HOM05D002781 ORTHO05D003382 5.1e-17 91.3 105 48.6
BolC1t01007H Brassica oleracea HOM05D002781 ORTHO05D003382 8.7e-17 90.5 107 45.8
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 8.7e-17 90.5 102 49.0
CSS0028741 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 8.7e-17 90.5 114 47.4
CARHR239090 Cardamine hirsuta HOM05D002781 ORTHO05D003382 8.7e-17 90.5 109 47.7
vmacro05094 Vaccinium macrocarpon HOM05D002781 ORTHO05D003382 8.7e-17 90.5 110 49.1
EL10Ac3g06163 Beta vulgaris HOM05D002781 ORTHO05D003382 1.1e-16 90.1 109 46.8
BcaNung01536 Brassica carinata HOM05D002781 ORTHO05D003382 1.1e-16 90.1 102 49.0
Medtr5g028360 Medicago truncatula HOM05D002781 ORTHO05D003382 1.1e-16 90.1 108 48.1
Aa31LG2G19130 Aethionema arabicum HOM05D002781 ORTHO05D003382 1.5e-16 89.7 105 48.6
AT4G31180 Arabidopsis thaliana HOM05D002781 ORTHO05D003382 1.5e-16 89.7 107 45.8
C01p10470 Brassica napus HOM05D004115 ORTHO05D005004 1.5e-16 89.7 107 45.8
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 1.5e-16 89.7 102 48.0
Zm00001eb231430 Zea mays HOM05D002781 ORTHO05D003382 1.5e-16 89.7 112 42.0
Zm00001eb338990 Zea mays HOM05D002781 ORTHO05D003382 1.5e-16 89.7 112 42.0
Os02g0686400 Oryza sativa ssp. japonica HOM05D002781 ORTHO05D003382 3.3e-16 88.6 112 42.0
A01p08930 Brassica napus HOM05D004115 ORTHO05D005004 4.3e-16 88.2 107 46.7
BraA01t00839Z Brassica rapa HOM05D004115 ORTHO05D005004 7.3e-16 87.4 107 46.7
CBR_g19622 Chara braunii HOM05D002781 ORTHO05D003382 7.3e-16 87.4 105 46.7
AL7G11530 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 1.2e-15 86.7 103 46.6
Cpa.g.sc37.195 Carica papaya HOM05D002781 ORTHO05D003382 2.1e-15 85.9 109 45.9
BcaNung01537 Brassica carinata HOM05D002781 ORTHO05D003382 2.8e-15 85.5 108 45.4
CSS0008198 Camellia sinensis var. sinensis HOM05D002781 ORTHO05D003382 4.7e-15 84.7 111 46.8
Carub.0005s2052 Capsella rubella HOM05D002781 ORTHO05D003382 4.7e-15 84.7 119 41.2
Thhalv10024945m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 6.2e-15 84.3 103 44.7
QL12p029213 Quercus lobata HOM05D002781 ORTHO05D003382 6.2e-15 84.3 113 42.5
SMO351G0410 Selaginella moellendorffii HOM05D002781 ORTHO05D003382 6.2e-15 84.3 109 42.2
C05p23890 Brassica napus HOM05D002781 ORTHO05D003382 8.1e-15 84.0 107 44.9
BolC5t31108H Brassica oleracea HOM05D002781 ORTHO05D003382 8.1e-15 84.0 107 44.9
BolC5t31115H Brassica oleracea HOM05D002781 ORTHO05D003382 8.1e-15 84.0 107 44.9
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 1.8e-14 82.8 108 45.4
THA.LOC104803886 Tarenaya hassleriana HOM05D002781 ORTHO05D003382 1.8e-14 82.8 109 45.0
BraA03t15099Z Brassica rapa HOM05D002781 ORTHO05D003382 3.1e-14 82.0 112 43.8
Carub.0007s0994 Capsella rubella HOM05D002781 ORTHO05D003382 5.2e-14 81.3 107 42.1
Thhalv10023019m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 5.2e-14 81.3 103 41.7
BraA01t00657Z Brassica rapa HOM05D002781 ORTHO05D003382 9.0e-14 80.5 101 45.5
Os02g0139600 Oryza sativa ssp. japonica HOM05D002781 ORTHO05D003382 9.0e-14 80.5 109 40.4
Sp7g29070 Schrenkiella parvula HOM05D002781 ORTHO05D003382 9.0e-14 80.5 101 45.5
BcaC09g51901 Brassica carinata HOM05D002781 ORTHO05D003382 1.2e-13 80.1 101 45.5
C01p07800 Brassica napus HOM05D002781 ORTHO05D003382 1.2e-13 80.1 101 45.5
COL.COLO4_19460 Corchorus olitorius HOM05D002781 ORTHO05D003382 1.5e-13 79.7 93 46.2
A01p07050 Brassica napus HOM05D002781 ORTHO05D003382 2.6e-13 79.0 101 44.6
MCO02G405 Micromonas commoda HOM05D002781 ORTHO05D003382 2.6e-13 79.0 103 46.6
BcaNung01331 Brassica carinata HOM05D002781 ORTHO05D003382 1.7e-12 76.3 110 43.6
Aa31LG10G520 Aethionema arabicum HOM05D002781 ORTHO05D003382 2.9e-12 75.5 110 41.8
BolC1t00766H Brassica oleracea HOM05D002781 ORTHO05D003382 2.9e-12 75.5 102 45.1
BcaC07g39721 Brassica carinata HOM05D002781 ORTHO05D003382 3.8e-12 75.1 109 39.4
ATR0618G057 Amborella trichopoda HOM05D002781 ORTHO05D003382 2.4e-11 72.4 109 41.3
Cre06.g279150 Chlamydomonas reinhardtii HOM05D002781 ORTHO05D003382 4.2e-11 71.6 108 42.6
Thhalv10015942m.g Eutrema salsugineum HOM05D002781 ORTHO05D003382 1.6e-10 69.7 101 38.6
arahy.Tifrunner.gnm1.ann1.B49C2G Arachis hypogaea HOM05D002781 ORTHO05D003382 2.1e-10 69.3 110 40.9
PRCOL_00003891 Prasinoderma coloniale HOM05D002781 ORTHO05D003382 2.3e-09 65.9 106 36.8
AL5G34940 Arabidopsis lyrata HOM05D002781 ORTHO05D003382 3.9e-09 65.1 100 36.0
Psat7g219120 Pisum sativum HOM05D002781 ORTHO05D022740 3.9e-09 65.1 76 46.1
MD12G1153800 Malus domestica HOM05D002781 ORTHO05D003382 1.5e-08 63.2 74 52.7
SGA_v2.0_scaffold51G18727 Striga asiatica HOM05D002781 ORTHO05D003382 1.9e-08 62.8 133 35.3
MD14G1143300 Malus domestica HOM05D002781 ORTHO05D247948 3.3e-08 62.0 79 48.1
Lsat_1_v5_gn_5_33240 Lactuca sativa HOM05D002781 ORTHO05D003382 5.6e-08 61.2 75 44.0
AUR62002480 Chenopodium quinoa HOM05D002781 ORTHO05D003382 7.3e-08 60.8 75 44.0
HPP92_010332 Vanilla planifolia HOM05D002781 ORTHO05D003382 1.6e-07 59.7 82 45.1
QL12p029110 Quercus lobata HOM05D002781 ORTHO05D003382 2.1e-07 59.3 58 55.2
QL12p029302 Quercus lobata HOM05D002781 ORTHO05D003382 2.8e-07 58.9 59 54.2
ATR0665G581 Amborella trichopoda HOM05D002781 ORTHO05D003382 6.2e-07 57.8 65 47.7
Sabra06G0064900 Salix brachista HOM05D002781 ORTHO05D003382 6.2e-07 57.8 92 38.0
Peaxi162Scf00858g00018 Petunia axillaris HOM05D002781 ORTHO05D003382 8.1e-07 57.4 88 40.9
TPR.G38912 Trifolium pratense HOM05D002781 ORTHO05D003382 1.1e-06 57.0 36 72.2
MBI13_g33568_MAGBIO Magnolia biondii HOM05D002781 ORTHO05D003382 1.8e-06 56.2 100 36.0
CAN.G694.96 Capsicum annuum HOM05D000185 ORTHO05D000368 3.1e-06 55.5 74 45.9
CAN.G786.6 Capsicum annuum HOM05D002781 ORTHO05D003382 9.0e-06 53.9 36 63.9
RcHm_v2.0_Chr5g0032161 Rosa chinensis HOM05D002781 ORTHO05D003382 9.0e-06 53.9 100 41.0


User provided reference genes

Program Settings