Gene: Sopen05g034640

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen05g034640
  • Transcript Identifier Sopen05g034640.1
  • Gene Type Coding gene
  • Location Spenn-ch05 : 77690695-77696860 : negative

Gene Family Information

  • ID HOM05D002781
  • #Genes/#Species 248/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen05g034640.1

Descriptions

  • Description Class II aminoacyl-tRNA and biotin synthetases superfamily protein | FUNCTIONS IN: aminoacyl-tRNA ligase activity, aspartate-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding | INVOLVED IN: response to cadmium ion, aspartyl-tRNA aminoacylation | LOCATED IN: chloroplast, cytoplasm | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type , Nucleic acid-binding, OB-fold , Nucleic acid binding, OB-fold, tRNA/helicase-type , Aminoacyl-tRNA synthetase, class II, conserved domain , Aspartyl/Asparaginyl-tRNA synthetase, class IIb , Nucleic acid-binding, OB-fold-like , Aminoacyl-tRNA synthetase, class II (D/K/N) , Aminoacyl-tRNA synthetase, class II (D/K/N)-like | BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006422
IEA
InterProaspartyl-tRNA aminoacylation
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT4G31180
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT4G31180

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0005524
IEA
InterProATP binding
GO:0004815
IEA
InterProaspartate-tRNA ligase activity
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
InterProcytoplasm
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G26870
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G31180
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT4G31180

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR004523 Aspartate-tRNA synthetase, type 2
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
17.2.4 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase