Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 8.3e-180 633.6 331 100.0
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.1e-175 619.0 331 97.3
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-173 613.2 331 96.1
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 6.8e-158 560.8 336 83.9
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 8.9e-158 560.5 331 90.0
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 2.3e-145 519.2 342 79.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.1e-143 512.7 334 78.4
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.2e-140 502.7 253 97.2
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.0e-129 465.7 329 72.9
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 1.9e-128 463.0 333 71.8
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 5.6e-128 461.5 341 71.3
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 6.2e-127 458.0 333 69.7
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.1e-126 457.2 330 70.9
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 5.3e-126 454.9 329 75.4
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 7.6e-125 451.1 336 69.9
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.2e-124 449.5 325 69.2
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 3.8e-124 448.7 323 70.3
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 4.9e-124 448.4 340 68.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 6.4e-124 448.0 338 67.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 1.9e-123 446.4 278 75.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 2.4e-123 446.0 332 68.1
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.2e-123 445.3 334 69.2
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 7.1e-123 444.5 332 67.5
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 7.1e-123 444.5 340 68.2
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 7.1e-123 444.5 338 73.7
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 3.5e-122 442.2 331 68.3
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.6e-122 441.8 338 66.6
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.0e-121 440.7 325 68.3
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 2.3e-121 439.5 332 66.9
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.0e-121 439.1 347 66.9
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.9e-121 438.7 338 70.4
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.5e-120 436.8 291 72.5
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.5e-120 436.8 291 72.5
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 2.5e-120 436.0 327 69.1
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 2.5e-120 436.0 319 67.1
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 3.3e-120 435.6 323 68.7
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 4.3e-120 435.3 325 68.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 5.6e-120 434.9 321 73.2
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 5.6e-120 434.9 342 66.1
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 9.6e-120 434.1 323 67.5
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 9.6e-120 434.1 323 67.5
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 9.6e-120 434.1 336 71.4
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.3e-119 433.7 319 66.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.3e-119 433.7 334 67.7
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.1e-119 433.0 340 67.6
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 2.8e-119 432.6 331 66.2
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.1e-118 430.6 338 69.8
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.4e-118 429.5 336 67.9
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.9e-118 427.9 339 64.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 9.0e-118 427.6 291 75.6
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 1.2e-117 427.2 327 67.3
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.2e-117 427.2 336 67.3
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 1.5e-117 426.8 336 65.5
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.5e-117 426.8 333 65.5
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 2.0e-117 426.4 300 70.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.0e-117 426.4 306 69.6
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.4e-117 425.6 334 66.8
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 5.8e-117 424.9 341 67.2
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 1.9e-115 419.9 325 68.3
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 2.4e-115 419.5 321 66.7
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.2e-115 418.7 286 71.3
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 3.5e-114 415.6 256 75.8
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 4.6e-114 415.2 284 72.5
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 7.9e-114 414.5 327 65.1
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.3e-113 412.9 333 66.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 3.9e-113 412.1 314 65.3
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 6.7e-113 411.4 328 66.2
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.5e-112 410.2 339 65.2
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 9.6e-112 407.5 339 66.1
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.6e-111 406.8 338 64.8
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.1e-110 404.1 225 83.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.4e-110 403.7 222 84.2
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.8e-110 403.3 225 82.7
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.8e-110 403.3 248 76.6
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.2e-109 400.6 273 71.1
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.5e-109 400.2 255 74.1
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.7e-108 396.7 256 71.9
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.2e-108 396.4 338 65.4
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 2.9e-108 396.0 332 67.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 2.9e-108 396.0 328 67.1
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 7.1e-107 391.3 342 64.3
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.9e-104 383.3 305 63.0
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.2e-100 369.8 341 58.7
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 6.1e-98 361.7 312 60.9
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.1e-96 357.5 206 81.1
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 7.4e-96 354.8 333 60.4
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 6.9e-94 348.2 217 77.0
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.5e-92 341.7 227 70.0
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.5e-92 341.7 227 70.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 1.4e-91 340.5 257 63.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 6.7e-89 331.6 212 75.5
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 7.4e-88 328.2 367 51.0
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.1e-86 322.8 272 66.2
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 4.2e-83 312.4 325 53.5
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 5.5e-83 312.0 497 41.9
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.6e-82 309.3 325 52.9
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.0e-81 307.8 220 63.2
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 3.7e-79 299.3 255 61.6
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.7e-76 290.4 255 59.6
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.6e-74 283.9 255 52.2
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.5e-72 277.3 167 77.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 3.3e-72 276.2 337 53.4
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 2.4e-70 270.0 256 52.7
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.9e-67 260.4 230 65.7
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.8e-65 251.9 215 58.6
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 2.2e-63 246.9 255 52.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.8e-63 246.5 208 60.6
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 9.5e-59 231.5 205 53.7
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.4e-57 227.6 224 62.9
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.2e-57 225.7 247 52.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 4.5e-53 212.6 190 62.6
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 8.9e-49 198.4 159 65.4
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.9e-39 166.8 97 77.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.3e-36 157.9 109 69.7
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 3.4e-32 143.3 175 40.0
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.5e-29 133.3 155 48.4
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 3.6e-26 123.2 62 88.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 2.1e-21 107.5 105 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 6.0e-21 105.9 78 65.4
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 7.1e-14 82.4 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-10 69.3 68 54.4
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 6.2e-10 69.3 68 54.4
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.2e-08 65.1 170 36.5


User provided reference genes

Program Settings