Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.2e-298 1026.9 518 100.0
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-250 869.0 468 95.1
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-154 550.1 294 95.9
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.5e-153 545.8 294 95.2
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-151 540.8 294 94.2
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.5e-151 540.4 294 93.9
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 9.0e-149 531.2 281 95.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 7.9e-145 518.1 280 91.4
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.3e-144 517.3 281 91.1
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.9e-143 513.5 281 90.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 2.5e-143 513.1 281 90.4
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 5.7e-143 511.9 281 90.4
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 7.4e-143 511.5 281 90.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.6e-142 510.4 281 89.3
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 8.2e-142 508.1 281 89.7
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.1e-141 506.1 281 89.3
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 5.3e-141 505.4 281 89.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.0e-140 503.4 281 89.3
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 5.9e-140 501.9 279 89.2
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.0e-139 501.1 281 88.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.3e-139 500.7 281 89.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.3e-139 500.7 281 88.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.8e-139 499.2 281 88.3
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.4e-138 497.3 294 85.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 7.2e-138 495.0 330 77.3
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 7.2e-138 495.0 282 86.9
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 7.2e-138 495.0 282 86.9
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 7.2e-138 495.0 281 88.6
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.6e-137 493.8 294 85.0
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 2.7e-137 493.0 281 87.9
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 3.6e-137 492.7 330 77.9
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 6.1e-137 491.9 330 77.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 7.9e-137 491.5 281 85.8
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.8e-136 490.3 281 87.9
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 3.9e-136 489.2 281 86.1
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 3.9e-136 489.2 281 87.9
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 5.1e-136 488.8 294 83.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.8e-136 488.0 282 86.2
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.5e-135 487.3 281 85.8
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.5e-135 487.3 294 82.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.0e-135 486.9 292 83.9
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.0e-135 486.9 281 86.5
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.0e-135 486.9 294 83.7
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.3e-135 486.1 282 86.9
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 7.4e-135 485.0 294 83.3
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 7.4e-135 485.0 294 83.3
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 7.4e-135 485.0 294 83.3
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 7.4e-135 485.0 282 85.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 9.7e-135 484.6 282 85.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 9.7e-135 484.6 282 85.8
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 9.7e-135 484.6 282 85.5
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.7e-134 483.8 282 85.1
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 2.2e-134 483.4 282 85.5
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.2e-134 483.4 294 83.3
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 3.7e-134 482.6 320 79.1
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 4.8e-134 482.3 294 81.6
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 4.8e-134 482.3 281 85.4
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 8.2e-134 481.5 294 83.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.1e-133 481.1 282 85.1
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 4.1e-133 479.2 281 85.4
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 9.1e-133 478.0 281 82.2
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-132 477.2 282 84.8
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.5e-132 477.2 281 85.1
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 2.0e-132 476.9 280 86.4
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.0e-132 476.9 312 79.2
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.4e-132 476.1 281 85.8
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 4.5e-132 475.7 281 84.0
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-131 474.6 294 82.0
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-131 474.6 294 82.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.0e-131 474.6 294 82.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.3e-131 474.2 281 85.4
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 6.5e-131 471.9 281 82.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 8.5e-131 471.5 282 84.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 8.5e-131 471.5 281 82.6
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 8.5e-131 471.5 281 83.6
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.1e-130 471.1 282 83.0
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.9e-130 470.3 281 83.3
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.9e-130 470.3 281 83.6
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.2e-130 468.4 278 84.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 9.4e-130 468.0 279 82.8
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 6.1e-129 465.3 295 81.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 6.1e-129 465.3 287 82.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.3e-128 463.4 305 77.7
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 8.2e-126 454.9 282 81.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.1e-125 454.5 288 80.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 7.0e-125 451.8 277 78.0
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.6e-124 450.7 257 87.2
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.8e-123 446.0 279 77.8
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.0e-123 445.7 290 76.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 8.5e-123 444.9 251 88.4
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 4.2e-122 442.6 312 73.1
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 2.1e-121 440.3 277 81.2
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 3.6e-121 439.5 296 77.7
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 8.0e-121 438.3 282 79.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 8.8e-120 434.9 281 78.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.5e-119 434.1 281 77.6
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.4e-117 427.6 273 75.5
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 4.5e-116 422.5 238 87.8
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.9e-116 422.2 274 79.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.3e-115 421.0 242 86.0
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 8.5e-115 418.3 289 69.2
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 9.4e-114 414.8 276 72.1
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.6e-113 414.1 352 65.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 8.0e-113 411.8 256 78.5
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.8e-109 400.6 239 84.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.5e-106 391.0 238 83.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 5.5e-106 389.0 281 72.2
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 4.0e-104 382.9 298 69.1
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.1e-101 372.9 290 69.7
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 5.4e-101 372.5 279 71.3
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.4e-96 357.8 278 69.4
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.4e-87 326.2 191 85.9
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 7.5e-87 325.5 266 66.2
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.6e-84 316.2 281 57.3
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-80 303.5 238 66.4
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 7.8e-76 288.9 219 70.3
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 5.1e-75 286.2 163 84.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.4e-72 277.3 199 70.4
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.4e-71 273.5 173 78.6
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 4.3e-66 256.5 200 68.5
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-66 256.5 204 66.7
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.5e-63 248.1 160 75.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.8e-57 226.5 131 87.0
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 1.7e-54 218.0 289 40.5
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.2e-53 213.8 290 38.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.2e-53 213.4 124 82.3
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.3e-53 212.2 126 81.0
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 6.7e-51 206.1 277 39.7
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 2.6e-31 141.0 80 81.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 7.6e-31 139.4 79 87.3
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 3.6e-28 130.6 117 65.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 2.7e-20 104.4 100 63.0
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.1e-19 100.1 51 98.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 6.7e-19 99.8 101 56.4
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 6.7e-19 99.8 101 56.4
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.3e-18 97.4 114 55.3
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.3e-18 97.4 65 72.3
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 4.4e-18 97.1 53 86.8
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 4.4e-18 97.1 143 46.9
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.1e-16 90.5 146 45.2
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.4e-15 87.4 87 55.2
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 1.3e-14 85.5 54 88.9
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-12 79.0 52 75.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.9e-11 73.9 59 62.7
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.1e-10 72.4 50 72.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-09 68.9 66 57.6
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-08 65.9 40 85.0
SGA_v2.0_scaffold62G21603 Striga asiatica HOM05D004528 ORTHO05D405781 3.5e-07 60.8 132 34.8
SGA_v2.0_scaffold62G21601 Striga asiatica HOM05D004528 ORTHO05D399248 7.7e-07 59.7 57 49.1


User provided reference genes

Program Settings