Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0558 Fragaria x ananassa HOM05D003901 ORTHO05D004511 4.1e-74 281.2 132 100.0
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 7.8e-73 276.9 129 100.0
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 7.8e-73 276.9 129 100.0
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 7.8e-73 276.9 129 100.0
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 7.8e-73 276.9 129 100.0
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 8.6e-72 273.5 129 99.2
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 2.4e-69 265.4 129 93.0
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 8.9e-69 263.5 129 90.7
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 4.4e-68 261.2 129 89.9
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 4.4e-68 261.2 129 89.9
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 5.8e-68 260.8 129 90.7
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 9.9e-68 260.0 129 89.1
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 9.9e-68 260.0 129 89.9
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 2.2e-67 258.8 129 89.9
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 2.2e-67 258.8 129 88.4
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 2.2e-67 258.8 129 88.4
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 2.9e-67 258.5 129 89.1
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 3.8e-67 258.1 129 89.1
Dinv29461 Davidia involucrata HOM05D003901 ORTHO05D004511 6.4e-67 257.3 129 89.1
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 6.4e-67 257.3 129 89.9
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 8.4e-67 256.9 129 89.9
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 8.4e-67 256.9 129 88.4
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 8.4e-67 256.9 130 90.0
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 1.1e-66 256.5 129 87.6
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 1.1e-66 256.5 129 89.9
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 1.4e-66 256.1 129 88.4
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 1.4e-66 256.1 129 89.1
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 1.9e-66 255.8 129 87.6
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.4e-66 255.4 129 87.6
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 2.4e-66 255.4 129 89.1
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.4e-66 255.4 129 89.1
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 2.4e-66 255.4 129 88.4
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 3.2e-66 255.0 129 89.1
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 3.2e-66 255.0 129 86.8
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 3.2e-66 255.0 129 86.8
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 4.2e-66 254.6 129 87.6
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 4.2e-66 254.6 129 88.4
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 4.2e-66 254.6 129 86.0
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 5.4e-66 254.2 129 87.6
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 7.1e-66 253.8 129 86.8
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 9.3e-66 253.4 129 86.8
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 1.2e-65 253.1 129 87.6
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 1.6e-65 252.7 129 86.0
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 1.6e-65 252.7 129 86.8
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 1.6e-65 252.7 129 86.8
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 2.1e-65 252.3 129 86.8
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.7e-65 251.9 129 86.8
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 4.6e-65 251.1 129 85.3
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 6.0e-65 250.8 129 86.0
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 6.0e-65 250.8 129 86.0
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 7.8e-65 250.4 129 85.3
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 7.8e-65 250.4 129 86.0
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 1.0e-64 250.0 129 83.7
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.0e-64 250.0 129 86.8
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.0e-64 250.0 129 86.8
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.0e-64 250.0 129 86.0
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 1.3e-64 249.6 129 85.3
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.7e-64 249.2 129 84.5
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 1.7e-64 249.2 129 84.5
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 2.3e-64 248.8 129 86.0
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 2.3e-64 248.8 129 85.3
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 3.0e-64 248.4 129 86.0
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 3.0e-64 248.4 129 85.3
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 3.0e-64 248.4 129 86.0
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 3.9e-64 248.1 129 84.5
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 3.9e-64 248.1 129 86.0
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 85.3
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 83.7
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 83.7
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 85.3
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 84.5
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 84.5
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 6.6e-64 247.3 129 84.5
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 8.7e-64 246.9 129 84.5
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 8.7e-64 246.9 129 84.5
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.9e-63 245.7 129 85.3
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 2.5e-63 245.4 133 84.2
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 3.3e-63 245.0 129 84.5
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 3.3e-63 245.0 129 85.3
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 3.3e-63 245.0 130 83.8
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 4.3e-63 244.6 129 82.9
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 5.6e-63 244.2 130 85.4
Actinidia24202 Actinidia chinensis HOM05D003901 ORTHO05D004511 9.6e-63 243.4 129 83.7
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 9.6e-63 243.4 129 85.3
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 3.6e-62 241.5 129 82.9
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 4.8e-62 241.1 129 83.7
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 4.8e-62 241.1 129 84.5
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 4.8e-62 241.1 129 84.5
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 4.8e-62 241.1 131 83.2
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 4.8e-62 241.1 131 83.2
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 6.2e-62 240.7 129 83.7
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 1.8e-61 239.2 130 83.8
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 2.4e-61 238.8 129 82.9
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 2.4e-61 238.8 129 81.4
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 4.0e-61 238.0 129 82.9
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 6.9e-61 237.3 129 83.7
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 6.9e-61 237.3 129 82.2
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 9.0e-61 236.9 162 69.1
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.2e-60 236.5 129 83.7
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 1.5e-60 236.1 129 79.8
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 1.5e-60 236.1 129 79.1
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 2.0e-60 235.7 130 83.1
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 2.0e-60 235.7 130 83.1
Oeu038978.1 Olea europaea HOM05D003901 ORTHO05D004511 2.0e-60 235.7 129 80.6
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 2.6e-60 235.3 130 83.1
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 2.6e-60 235.3 129 82.2
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 5.8e-60 234.2 169 66.3
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 5.8e-60 234.2 129 81.4
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 7.6e-60 233.8 129 82.2
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 9.9e-60 233.4 130 82.3
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 9.9e-60 233.4 130 82.3
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 9.9e-60 233.4 130 82.3
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 6.4e-59 230.7 129 79.1
Aqoxy2G01563 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 6.4e-59 230.7 129 79.1
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 3.2e-58 228.4 131 78.6
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 9.3e-58 226.9 133 79.7
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 7.9e-57 223.8 131 76.3
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 1.0e-56 223.4 131 77.1
RcHm_v2.0_Chr1g0317741 Rosa chinensis HOM05D003901 ORTHO05D004511 3.3e-55 218.4 109 89.9
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 6.2e-54 214.2 129 73.6
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 1.1e-53 213.4 129 73.6
FAN25G0520 Fragaria x ananassa HOM05D003901 ORTHO05D004511 9.3e-50 200.3 93 100.0
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 2.1e-49 199.1 129 68.2
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 7.9e-49 197.2 120 72.5
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 6.7e-48 194.1 129 67.4
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.5e-47 193.0 129 65.9
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 1.5e-47 193.0 129 65.9
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 2.9e-43 178.7 95 84.2
Cc03_g06690 Coffea canephora HOM05D003901 ORTHO05D004511 8.4e-43 177.2 94 83.0
Cpa.g.sc1624.1 Carica papaya HOM05D003901 ORTHO05D004511 3.5e-41 171.8 88 87.5
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 1.0e-40 170.2 130 58.5
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 1.5e-39 166.4 93 77.4
Gohir.D08G014900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 7.4e-39 164.1 88 84.1
CDE06G1438 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.9e-34 149.4 128 58.6
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 1.3e-32 143.3 127 48.0
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 1.3e-32 143.3 127 48.0
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 5.9e-28 127.9 127 44.1
TPR.G7702 Trifolium pratense HOM05D003901 ORTHO05D004511 3.2e-26 122.1 65 83.1
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 6.7e-24 114.4 129 48.1
Sp5g16690 Schrenkiella parvula HOM05D003901 ORTHO05D004511 6.7e-24 114.4 70 74.3
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 2.6e-23 112.5 128 39.1
Sp5g16720 Schrenkiella parvula HOM05D003901 ORTHO05D004511 4.8e-22 108.2 70 71.4
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.1e-18 97.1 129 34.9
Lj1A234G35 Lonicera japonica HOM05D003901 ORTHO05D004511 9.4e-18 94.0 101 48.5
Prupe.8G049400 Prunus persica HOM05D003901 ORTHO05D004511 1.3e-14 83.6 39 92.3
SEGI_08454 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 1.2e-09 67.0 37 73.0
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 2.1e-09 66.2 113 34.5
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 6.1e-09 64.7 123 30.9
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.4e-08 63.5 105 37.1
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.3e-08 62.8 119 31.1
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 6.7e-08 61.2 123 29.3
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 6.7e-08 61.2 123 29.3
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 6.7e-08 61.2 119 28.6
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 6.7e-08 61.2 119 31.1
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 8.8e-08 60.8 124 29.8
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 8.8e-08 60.8 124 29.8
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 1.2e-07 60.5 124 28.2
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.5e-07 60.1 123 27.6
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 2.6e-07 59.3 122 27.0
Actinidia37332 Actinidia chinensis HOM05D003901 ORTHO05D004511 7.5e-07 57.8 26 92.3
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 7.5e-07 57.8 122 27.9
SGA_v2.0_scaffold21G09652 Striga asiatica HOM05D003901 ORTHO05D051379 2.8e-06 55.8 35 71.4


User provided reference genes

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