Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 0.0e+00 1096.3 572 100.0
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.0e-282 975.3 585 90.1
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.4e-280 969.1 585 89.6
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 1.4e-275 952.6 585 88.5
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 6.7e-262 907.1 585 83.9
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 2.5e-261 905.2 530 92.1
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 7.0e-227 790.8 585 73.0
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 5.4e-219 764.6 586 71.0
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 4.4e-197 691.8 531 68.9
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.9e-192 676.4 590 63.1
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.9e-192 676.4 590 63.2
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 2.1e-191 672.9 525 67.0
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 6.2e-191 671.4 534 66.5
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.3e-190 669.5 539 67.2
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 3.4e-189 665.6 534 67.4
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 7.5e-189 664.5 590 62.7
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 2.9e-188 662.5 590 63.1
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 4.9e-188 661.8 636 59.1
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.1e-187 660.6 593 62.7
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 1.4e-187 660.2 591 61.1
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 1.9e-187 659.8 591 62.3
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 6.0e-186 654.8 517 67.1
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.0e-185 654.1 602 60.6
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 4.3e-184 648.7 591 60.9
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 4.3e-184 648.7 535 65.2
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 7.3e-184 647.9 533 64.9
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 9.5e-184 647.5 611 59.2
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.8e-183 646.0 586 60.9
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 8.1e-183 644.4 592 61.3
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 8.1e-183 644.4 586 61.1
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.1e-182 644.0 589 60.6
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.4e-182 643.7 592 60.5
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 3.1e-182 642.5 541 64.9
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 3.1e-182 642.5 592 60.5
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 6.8e-182 641.3 470 72.1
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 3.4e-181 639.0 592 59.6
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 5.8e-181 638.3 593 60.2
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 5.8e-181 638.3 516 65.7
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 9.9e-181 637.5 473 69.8
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 6.4e-180 634.8 589 59.8
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.2e-178 630.6 552 62.5
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 1.0e-177 627.5 458 72.9
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 1.0e-177 627.5 592 60.5
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 3.0e-177 625.9 592 59.6
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 8.7e-177 624.4 519 63.8
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 4.3e-176 622.1 591 58.5
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 1.6e-175 620.2 464 70.0
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 3.1e-174 615.9 536 62.5
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 6.9e-174 614.8 585 58.5
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.2e-173 614.0 549 62.3
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 3.4e-173 612.5 575 60.0
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 7.6e-173 611.3 535 62.6
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 9.9e-173 610.9 585 58.1
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 3.8e-172 609.0 590 58.0
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 4.9e-172 608.6 529 62.2
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 6.4e-172 608.2 576 59.9
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 3.2e-171 605.9 530 62.6
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 5.4e-171 605.1 546 61.0
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 9.3e-171 604.4 471 67.1
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 1.6e-170 603.6 590 57.8
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 1.6e-170 603.6 558 59.7
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 2.1e-170 603.2 546 60.6
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 2.1e-170 603.2 473 66.8
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 2.1e-170 603.2 504 64.3
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 2.7e-170 602.8 472 68.2
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 2.7e-170 602.8 526 62.2
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 2.7e-170 602.8 526 62.2
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 7.8e-170 601.3 472 67.6
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 1.7e-169 600.1 574 58.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 3.9e-169 599.0 523 62.1
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.1e-168 597.4 561 58.5
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 1.5e-168 597.0 541 61.2
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 3.3e-168 595.9 471 66.9
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 2.1e-167 593.2 541 60.8
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 1.4e-166 590.5 529 61.8
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.4e-166 590.5 531 61.2
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 6.9e-166 588.2 544 59.4
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 7.6e-165 584.7 530 61.7
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 3.8e-164 582.4 553 60.6
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 7.1e-163 578.2 507 62.1
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 2.1e-162 576.6 535 59.8
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 2.1e-162 576.6 473 65.1
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.0e-161 574.3 535 59.6
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.3e-161 573.9 475 66.1
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 5.6e-160 568.5 535 59.1
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 5.5e-155 552.0 562 55.2
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 9.3e-155 551.2 549 56.1
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 3.7e-151 539.3 450 64.9
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 1.4e-150 537.3 440 64.1
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 8.4e-148 528.1 532 55.6
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.1e-144 517.7 513 56.1
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.3e-143 511.9 452 61.9
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 2.7e-130 469.9 463 55.1
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 5.1e-129 465.7 496 54.8
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 8.2e-127 458.4 496 53.2
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 1.8e-102 377.5 318 67.0
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.6e-85 321.2 315 54.9
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 3.1e-81 307.0 314 56.1
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 6.0e-77 292.7 270 60.4
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 1.8e-73 281.2 192 72.4
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 3.1e-73 280.4 450 40.4
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 2.0e-72 277.7 266 56.8
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 7.8e-69 265.8 243 58.8
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 3.1e-65 253.8 494 34.8
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.4e-62 245.0 162 71.0
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 5.8e-56 223.0 158 74.1
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.2e-55 221.1 381 37.3
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 6.4e-55 219.5 120 81.7
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 1.2e-53 215.3 120 82.5
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.3e-52 211.1 213 52.6
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 3.9e-52 210.3 485 33.4
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 4.0e-49 200.3 176 61.9
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 4.6e-37 160.2 164 52.4
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 2.8e-34 151.0 78 87.2
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 8.2e-34 149.4 291 34.4
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 9.0e-33 146.0 106 73.6
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 2.0e-24 118.2 91 60.4
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 1.4e-22 112.1 161 46.0
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 4.2e-22 110.5 81 74.1
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 2.7e-21 107.8 208 37.5
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.0e-20 105.9 112 54.5
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 1.7e-18 98.6 67 79.1
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.7e-18 97.4 100 62.0
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 4.8e-18 97.1 78 66.7
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 1.3e-15 89.0 64 67.2
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 3.8e-15 87.4 150 44.7
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 3.6e-13 80.9 55 65.5
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 1.0e-12 79.3 45 71.1
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 2.8e-10 71.2 135 43.0


User provided reference genes

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