Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.0e-202 707.2 339 100.0
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.1e-199 698.7 339 98.8
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.9e-196 687.6 337 97.6
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.2e-194 682.9 339 97.1
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.6e-194 681.0 339 96.8
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.9e-188 661.8 342 93.6
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.4e-174 615.5 341 87.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.1e-168 596.7 340 84.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.4e-161 573.2 342 80.4
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 6.7e-161 570.9 343 80.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.2e-159 565.8 341 80.1
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.9e-156 555.4 340 78.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.1e-155 553.5 340 78.5
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.1e-155 553.5 342 78.9
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 7.2e-155 550.8 339 76.7
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 9.4e-155 550.4 311 82.6
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 9.4e-155 550.4 341 78.9
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.6e-154 549.7 341 78.9
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.7e-154 548.9 331 77.9
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 6.1e-154 547.7 338 75.7
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 4.0e-153 545.0 326 78.8
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.8e-153 543.9 333 78.4
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.2e-152 543.5 330 80.0
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.0e-152 542.7 346 77.2
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 3.3e-152 542.0 332 79.2
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 4.4e-152 541.6 331 78.9
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 5.7e-152 541.2 317 80.8
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 9.7e-152 540.4 339 76.7
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.7e-151 539.7 328 78.0
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.8e-151 538.1 340 74.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.8e-151 538.1 334 76.9
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.8e-150 536.2 344 77.6
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 5.3e-150 534.6 333 76.0
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.2e-149 533.5 336 78.0
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.2e-149 533.5 308 82.5
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.6e-149 533.1 345 78.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.6e-149 533.1 310 81.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.7e-149 532.3 332 77.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 3.5e-149 531.9 340 73.8
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.5e-149 531.9 329 77.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.0e-148 530.4 341 76.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.7e-148 529.6 327 75.8
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.7e-148 529.6 329 76.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.2e-148 529.3 330 77.6
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.2e-148 529.3 331 76.7
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.2e-148 529.3 353 73.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.2e-148 529.3 332 75.6
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 5.0e-148 528.1 337 76.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.9e-147 526.2 328 76.2
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.5e-147 525.8 337 77.2
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 3.2e-147 525.4 342 75.7
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 4.2e-147 525.0 342 74.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 4.2e-147 525.0 329 76.6
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 5.5e-147 524.6 331 77.3
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 7.2e-147 524.2 340 76.5
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 9.4e-147 523.9 338 75.1
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.2e-146 523.5 339 74.6
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.2e-146 523.5 333 74.8
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.6e-146 523.1 329 75.4
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.1e-146 522.7 327 75.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 2.7e-146 522.3 327 75.5
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 4.7e-146 521.5 330 73.9
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 6.1e-146 521.2 328 75.3
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.0e-145 518.8 341 74.2
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 4.0e-145 518.5 328 75.3
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.2e-145 518.1 330 75.5
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 6.8e-145 517.7 330 73.6
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 6.8e-145 517.7 323 76.2
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.2e-144 516.9 310 76.8
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.6e-144 515.8 329 74.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.4e-144 515.4 330 72.4
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 1.7e-143 513.1 331 72.5
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.7e-143 513.1 331 72.5
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 1.7e-143 513.1 331 72.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.7e-143 513.1 333 73.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 3.7e-143 511.9 331 73.4
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.8e-143 511.5 331 72.2
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.8e-143 511.5 331 72.2
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 6.3e-143 511.1 333 73.0
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 8.3e-143 510.8 330 72.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 5.4e-142 508.1 333 73.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.2e-141 506.9 329 75.4
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 6.5e-140 501.1 324 72.5
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.5e-140 501.1 334 72.2
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.5e-139 500.0 330 74.5
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.5e-139 499.2 334 71.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.2e-138 496.9 328 71.3
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.0e-137 493.8 332 71.4
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.0e-137 492.3 340 72.4
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.0e-137 492.3 383 65.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.9e-137 490.7 339 72.6
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 5.7e-136 488.0 338 70.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 4.9e-135 485.0 338 70.7
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.4e-134 483.4 310 72.9
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 9.2e-134 480.7 333 71.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.2e-133 480.3 323 71.5
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.6e-133 479.9 318 73.9
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.0e-133 479.6 337 68.8
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 5.9e-133 478.0 329 70.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.3e-132 476.9 331 70.1
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.7e-132 476.5 323 72.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.5e-131 473.4 308 70.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.5e-131 473.4 316 72.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.5e-131 472.6 291 78.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.5e-131 470.7 329 66.9
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.8e-129 466.5 361 66.2
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 8.9e-129 464.2 292 75.3
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 9.8e-128 460.7 266 82.3
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.2e-127 459.5 318 71.1
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-126 456.8 306 68.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.3e-124 449.5 351 65.0
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 5.0e-124 448.4 334 66.5
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.6e-124 448.0 283 74.2
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.3e-123 445.3 309 71.5
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.2e-122 443.7 337 64.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.8e-122 442.6 306 68.0
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.8e-121 439.9 263 78.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-120 436.4 311 65.3
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.6e-117 426.8 276 72.8
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 3.9e-116 422.2 248 80.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.6e-112 409.5 287 69.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.4e-111 404.8 312 62.5
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.1e-110 404.1 312 62.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.5e-109 399.1 307 63.5
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.3e-103 380.6 374 52.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 5.8e-96 355.1 222 74.3
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.1e-94 350.9 305 60.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.8e-90 335.5 247 63.6
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 9.0e-89 331.3 244 65.6
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.8e-88 328.6 234 65.0
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.4e-81 306.6 232 64.7
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.5e-80 303.9 301 50.2
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 3.9e-76 289.3 258 57.4
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.6e-72 276.6 169 76.9
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.9e-71 273.1 304 49.0
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 8.7e-68 261.5 175 73.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 9.7e-59 231.5 143 74.8
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.0e-55 221.5 176 63.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.4e-54 217.6 130 76.2
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.2e-47 193.7 118 77.1
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.0e-31 141.7 171 49.7
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.8e-31 139.8 90 74.4
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 4.5e-24 116.3 75 62.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 3.8e-23 113.2 77 67.5
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.8e-21 107.1 64 75.0
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 3.0e-20 103.6 66 69.7
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.4e-17 94.7 55 80.0
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 6.6e-15 85.9 158 36.1
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.1e-14 85.1 80 61.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.6e-13 81.3 86 50.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 7.5e-11 72.4 226 25.2
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 7.5e-11 72.4 197 28.9
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 7.0e-09 65.9 78 50.0
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.6e-08 64.7 41 65.9
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 2.0e-08 64.3 95 34.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 4.6e-08 63.2 186 29.0
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 1.3e-07 61.6 213 25.8
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 5.0e-07 59.7 159 31.4
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 3.3e-06 57.0 180 28.9
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 4.3e-06 56.6 170 28.2
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 4.3e-06 56.6 159 29.6
Nn1g03510 Nelumbo nucifera HOM05D002024 ORTHO05D007288 7.3e-06 55.8 155 30.3


User provided reference genes

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