Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2704 Fragaria x ananassa HOM05D002561 ORTHO05D006466 5.7e-86 320.9 158 100.0
FvH4_2g10410 Fragaria vesca HOM05D002561 ORTHO05D006466 2.0e-83 312.4 155 99.4
FAN20G3107 Fragaria x ananassa HOM05D002561 ORTHO05D006466 3.8e-82 308.1 155 97.4
FAN27G0984 Fragaria x ananassa HOM05D002561 ORTHO05D006466 4.2e-81 304.7 155 96.1
FAN15G2087 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.1e-80 302.4 153 96.1
RcHm_v2.0_Chr6g0267881 Rosa chinensis HOM05D002561 ORTHO05D006466 7.4e-78 293.9 155 92.3
Rhsim06G0138000 Rhododendron simsii HOM05D002561 ORTHO05D006466 2.2e-69 265.8 155 78.7
Prupe.1G573700 Prunus persica HOM05D002561 ORTHO05D006466 4.1e-68 261.5 153 81.7
Dinv07536 Davidia involucrata HOM05D002561 ORTHO05D006466 9.1e-68 260.4 155 78.7
Dinv10164 Davidia involucrata HOM05D002561 ORTHO05D006466 9.1e-68 260.4 155 78.7
Actinidia11101 Actinidia chinensis HOM05D002561 ORTHO05D006466 2.0e-67 259.2 155 77.4
Sabra17G0011900 Salix brachista HOM05D002561 ORTHO05D006466 2.0e-67 259.2 155 80.0
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 2.0e-67 259.2 155 77.4
MBI07_g29117_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D006466 2.6e-67 258.8 155 78.7
PGSC0003DMG401009395 Solanum tuberosum HOM05D002561 ORTHO05D006466 4.5e-67 258.1 153 76.5
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 5.9e-67 257.7 153 77.1
Peaxi162Scf00845g00022 Petunia axillaris HOM05D002561 ORTHO05D006466 1.0e-66 256.9 153 77.1
Potri.017G014700 Populus trichocarpa HOM05D002561 ORTHO05D006466 1.0e-66 256.9 155 78.1
Prupe.6G177000 Prunus persica HOM05D002561 ORTHO05D006466 1.0e-66 256.9 153 80.4
TAR624G0407 Trochodendron aralioides HOM05D002561 ORTHO05D006466 1.0e-66 256.9 155 78.1
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 1.3e-66 256.5 155 77.4
Nn1g06426 Nelumbo nucifera HOM05D002561 ORTHO05D006466 1.3e-66 256.5 155 76.1
MD08G1220200 Malus domestica HOM05D002561 ORTHO05D006466 1.7e-66 256.1 155 78.1
Solyc07g053660.3 Solanum lycopersicum HOM05D002561 ORTHO05D006466 1.7e-66 256.1 153 76.5
Sopen07g027630 Solanum pennellii HOM05D002561 ORTHO05D006466 1.7e-66 256.1 153 76.5
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 2.2e-66 255.8 155 76.8
Lj8C108T5 Lonicera japonica HOM05D002561 ORTHO05D006466 2.9e-66 255.4 155 76.1
Potri.007G137300 Populus trichocarpa HOM05D002561 ORTHO05D006466 5.0e-66 254.6 155 78.1
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 1.4e-65 253.1 155 78.1
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 1.4e-65 253.1 155 76.1
Haze_13235 Corylus avellana HOM05D002561 ORTHO05D006466 1.4e-65 253.1 155 78.1
Haze_13238 Corylus avellana HOM05D002561 ORTHO05D006466 1.4e-65 253.1 155 78.1
Lj3g0012051 Lotus japonicus HOM05D002561 ORTHO05D006466 1.4e-65 253.1 155 76.8
MSTRG.15131 Avicennia marina HOM05D002561 ORTHO05D006466 2.5e-65 252.3 147 81.0
ClCG02G002370 Citrullus lanatus HOM05D002561 ORTHO05D006466 2.5e-65 252.3 153 75.8
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 3.2e-65 251.9 155 78.1
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 4.2e-65 251.5 155 78.1
Manes.13G142500 Manihot esculenta HOM05D002561 ORTHO05D006466 4.2e-65 251.5 155 74.8
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 9.4e-65 250.4 154 77.3
PGR142G4043 Punica granatum HOM05D002561 ORTHO05D006466 1.6e-64 249.6 156 77.6
EL10Ac9g20811 Beta vulgaris HOM05D002561 ORTHO05D006466 2.1e-64 249.2 154 77.3
CsaV3_7G003080 Cucumis sativus L. HOM05D002561 ORTHO05D006466 2.1e-64 249.2 153 74.5
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 2.1e-64 249.2 153 75.2
SGA_v2.0_scaffold70G23496 Striga asiatica HOM05D002561 ORTHO05D006466 2.1e-64 249.2 155 76.8
Nitab4.5_0000621g0150 Nicotiana tabacum HOM05D002561 ORTHO05D006466 2.7e-64 248.8 153 75.2
ECA240G2497 Erigeron canadensis HOM05D002561 ORTHO05D006466 6.1e-64 247.7 153 74.5
Ciclev10015209m.g Citrus clementina HOM05D002561 ORTHO05D006466 7.9e-64 247.3 155 74.8
Hma1.2p1_0002F.1_g002200 Hydrangea macrophylla HOM05D002561 ORTHO05D006466 7.9e-64 247.3 155 76.1
arahy.Tifrunner.gnm1.ann1.TSZ6TX Arachis hypogaea HOM05D002561 ORTHO05D006466 1.0e-63 246.9 155 76.8
arahy.Tifrunner.gnm1.ann1.UE4GYS Arachis hypogaea HOM05D002561 ORTHO05D006466 1.0e-63 246.9 155 76.8
Glyma.02G251700 Glycine max HOM05D002561 ORTHO05D006466 1.0e-63 246.9 155 73.5
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 1.0e-63 246.9 155 76.1
CANSAT64G1696 Cannabis sativa HOM05D002561 ORTHO05D006466 1.4e-63 246.5 155 74.2
Eucgr.K01052 Eucalyptus grandis HOM05D002561 ORTHO05D006466 2.3e-63 245.7 152 77.0
PSO782G0979 Papaver somniferum HOM05D002561 ORTHO05D006466 3.0e-63 245.4 155 71.6
Hund07915 Selenicereus undatus HOM05D002561 ORTHO05D006466 3.0e-63 245.4 147 78.2
Cpa.g.sc83.89 Carica papaya HOM05D002561 ORTHO05D006466 3.9e-63 245.0 155 74.2
Phvul.006G037700 Phaseolus vulgaris HOM05D002561 ORTHO05D006466 3.9e-63 245.0 155 74.8
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 3.9e-63 245.0 155 74.2
MELO3C018869.2 Cucumis melo HOM05D002561 ORTHO05D006466 5.1e-63 244.6 142 79.6
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 6.7e-63 244.2 155 75.5
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 1.1e-62 243.4 155 73.5
PSO210G7210 Papaver somniferum HOM05D002561 ORTHO05D006466 2.0e-62 242.7 155 71.0
Sed0023046 Sechium edule HOM05D002561 ORTHO05D006466 2.6e-62 242.3 140 79.3
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 4.4e-62 241.5 155 74.2
TWI14G0319 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 4.4e-62 241.5 155 72.9
Lsat_1_v5_gn_4_64440 Lactuca sativa HOM05D002561 ORTHO05D006466 5.7e-62 241.1 145 75.9
Nitab4.5_0004546g0040 Nicotiana tabacum HOM05D002561 ORTHO05D006466 5.7e-62 241.1 153 74.5
PSO832G1390 Papaver somniferum HOM05D002561 ORTHO05D006466 5.7e-62 241.1 155 71.0
COL.COLO4_28034 Corchorus olitorius HOM05D002561 ORTHO05D006466 7.4e-62 240.7 155 74.2
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 7.4e-62 240.7 147 74.1
CDE03G0236 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.3e-61 240.0 138 79.7
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 1.3e-61 240.0 155 72.9
TWI59G1106 Tripterygium wilfordii HOM05D002561 ORTHO05D006466 1.7e-61 239.6 155 73.5
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 4.8e-61 238.0 155 72.9
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 6.3e-61 237.7 153 74.5
AL7G24110 Arabidopsis lyrata HOM05D002561 ORTHO05D006466 8.2e-61 237.3 155 71.0
Medtr1g022960 Medicago truncatula HOM05D002561 ORTHO05D006466 1.1e-60 236.9 155 72.3
THA.LOC104804051 Tarenaya hassleriana HOM05D002561 ORTHO05D006466 1.1e-60 236.9 155 74.2
Zm00001eb064830 Zea mays HOM05D002561 ORTHO05D006466 1.4e-60 236.5 140 76.4
Aa31LG2G21970 Aethionema arabicum HOM05D002561 ORTHO05D006466 1.8e-60 236.1 155 72.3
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 2.4e-60 235.7 155 71.6
Os01g0238900 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D006466 3.1e-60 235.3 140 77.9
CARHR236220 Cardamine hirsuta HOM05D002561 ORTHO05D006466 7.0e-60 234.2 155 72.9
AT4G28450 Arabidopsis thaliana HOM05D002561 ORTHO05D006466 9.1e-60 233.8 155 69.7
BolC7t46099H Brassica oleracea HOM05D002561 ORTHO05D006466 1.2e-59 233.4 156 71.8
Psat6g009760 Pisum sativum HOM05D002561 ORTHO05D006466 1.2e-59 233.4 147 76.2
C07p56220 Brassica napus HOM05D002561 ORTHO05D006466 2.6e-59 232.3 156 71.8
Carub.0007s1225 Capsella rubella HOM05D002561 ORTHO05D006466 3.5e-59 231.9 155 69.0
Lalb_Chr25g0280621 Lupinus albus HOM05D002561 ORTHO05D006466 4.5e-59 231.5 145 74.5
Sp7g26430 Schrenkiella parvula HOM05D002561 ORTHO05D006466 4.5e-59 231.5 155 72.3
A03p58100 Brassica napus HOM05D002561 ORTHO05D006466 5.9e-59 231.1 156 71.8
BraA03t14876Z Brassica rapa HOM05D002561 ORTHO05D006466 5.9e-59 231.1 156 71.8
HPP92_000278 Vanilla planifolia HOM05D002561 ORTHO05D006466 5.5e-57 224.6 145 71.0
Atru.chr6.2875 Acer truncatum HOM05D002561 ORTHO05D006466 1.4e-55 219.9 134 74.6
QL08p040074 Quercus lobata HOM05D002561 ORTHO05D006466 3.0e-55 218.8 145 72.4
MD15G1410600 Malus domestica HOM05D002561 ORTHO05D006466 6.7e-55 217.6 130 83.1
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.7e-53 213.0 132 72.0
unitig_85.g27364 Utricularia gibba HOM05D002561 ORTHO05D006466 3.1e-52 208.8 125 74.4
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 4.1e-52 208.4 134 70.9
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 4.1e-52 208.4 134 70.9
Pp3c9_6000 Physcomitrium patens HOM05D002561 ORTHO05D006466 4.1e-52 208.4 154 64.9
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 2.7e-51 205.7 164 61.6
TPR.G22970 Trifolium pratense HOM05D002561 ORTHO05D006466 7.7e-51 204.1 123 75.6
TPR.G30494 Trifolium pratense HOM05D002561 ORTHO05D006466 1.3e-50 203.4 162 62.3
AagrBONN_evm.TU.Sc2ySwM_117.187 Anthoceros agrestis HOM05D002561 ORTHO05D006466 1.1e-49 200.3 139 67.6
Aqoxy4G00646 Aquilegia oxysepala HOM05D002561 ORTHO05D006466 4.2e-49 198.4 155 57.4
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 7.5e-46 187.6 139 62.6
SMO347G0106 Selaginella moellendorffii HOM05D002561 ORTHO05D006466 7.5e-46 187.6 146 58.2
AUR62025466 Chenopodium quinoa HOM05D002561 ORTHO05D006466 2.9e-42 175.6 151 60.9
CBR_g34460 Chara braunii HOM05D002561 ORTHO05D006466 4.7e-40 168.3 159 52.8
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 5.7e-38 161.4 96 76.0
Cre07.g318702 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D006466 1.7e-37 159.8 151 51.0
FvH4_2g08930 Fragaria vesca HOM05D002561 ORTHO05D006466 1.7e-37 159.8 94 83.0
MCO01G363 Micromonas commoda HOM05D002561 ORTHO05D006466 4.9e-37 158.3 146 50.7
Oeu016012.1 Olea europaea HOM05D002561 ORTHO05D006466 2.4e-36 156.0 91 81.3
TAR626G1404 Trochodendron aralioides HOM05D002561 ORTHO05D006466 2.4e-36 156.0 94 72.3
Actinidia11004 Actinidia chinensis HOM05D002561 ORTHO05D006466 7.0e-36 154.5 94 71.3
Sc21g0003230 Simmondsia chinensis HOM05D002561 ORTHO05D006466 5.9e-35 151.4 90 77.8
Sc04g0004740 Simmondsia chinensis HOM05D002561 ORTHO05D006466 6.6e-34 147.9 90 76.7
Sc04g0004770 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.1e-33 147.1 88 78.4
FvH4_4g09790 Fragaria vesca HOM05D002561 ORTHO05D006466 4.7e-32 141.7 87 81.6
PRCOL_00005495 Prasinoderma coloniale HOM05D002561 ORTHO05D006466 5.2e-31 138.3 143 47.6
FvH4_4g08860 Fragaria vesca HOM05D002561 ORTHO05D006466 8.3e-29 131.0 134 53.0
FAN24G0448 Fragaria x ananassa HOM05D002561 ORTHO05D006466 6.2e-24 114.8 139 50.4
FAN24G1197 Fragaria x ananassa HOM05D002561 ORTHO05D006466 6.2e-24 114.8 139 50.4
FAN24G1576 Fragaria x ananassa HOM05D002561 ORTHO05D006466 6.2e-24 114.8 139 50.4
FAN07G1962 Fragaria x ananassa HOM05D002561 ORTHO05D006466 3.7e-21 105.5 89 66.3
BcaB03g16272 Brassica carinata HOM05D002561 ORTHO05D006466 8.9e-15 84.3 54 75.9
BcaB07g33726 Brassica carinata HOM05D002288 ORTHO05D002894 3.1e-07 59.3 53 49.1
CDE07G1387 Ceratophyllum demersum HOM05D002288 ORTHO05D002894 4.0e-07 58.9 55 43.6
Cfa025162 Carpinus fangiana HOM05D001610 ORTHO05D123539 6.8e-07 58.2 59 42.4
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 6.8e-07 58.2 55 34.5
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 6.8e-07 58.2 55 34.5
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 6.8e-07 58.2 55 45.5
MSTRG.4561 Avicennia marina HOM05D002288 ORTHO05D002894 8.9e-07 57.8 75 40.0
Os05g0552300 Oryza sativa ssp. japonica HOM05D002288 ORTHO05D002894 1.2e-06 57.4 78 34.6
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.2e-06 57.4 55 38.2
PRCOL_00001031 Prasinoderma coloniale HOM05D002303 ORTHO05D006504 1.5e-06 57.0 84 34.5
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 2.0e-06 56.6 84 34.5
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 2.0e-06 56.6 85 35.3
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 2.0e-06 56.6 55 34.5
CSS0014295 Camellia sinensis var. sinensis HOM05D000453 ORTHO05D006365 2.6e-06 56.2 72 31.9
HanXRQChr16g0511391 Helianthus annuus HOM05D002332 ORTHO05D002509 2.6e-06 56.2 85 36.5
Mapoly0024s0099 Marchantia polymorpha HOM05D002303 ORTHO05D007639 2.6e-06 56.2 144 27.1
BcaC09g49926 Brassica carinata HOM05D002332 ORTHO05D002509 3.4e-06 55.8 83 34.9
C01p31140 Brassica napus HOM05D002332 ORTHO05D002509 3.4e-06 55.8 83 34.9
BolC1t03049H Brassica oleracea HOM05D002332 ORTHO05D002509 3.4e-06 55.8 83 34.9
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 4.4e-06 55.5 83 33.7
Thhalv10010392m.g Eutrema salsugineum HOM05D002332 ORTHO05D002509 4.4e-06 55.5 83 34.9
RcHm_v2.0_Chr6g0270771 Rosa chinensis HOM05D001335 ORTHO05D001184 4.4e-06 55.5 76 31.6
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 5.8e-06 55.1 60 41.7
CiPaw.16G042300 Carya illinoinensis HOM05D002332 ORTHO05D002509 5.8e-06 55.1 85 34.1
FvH4_4g08600 Fragaria vesca HOM05D000107 ORTHO05D006466 5.8e-06 55.1 31 83.9
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 5.8e-06 55.1 74 35.1
Sc03g0001210 Simmondsia chinensis HOM05D000453 ORTHO05D006365 5.8e-06 55.1 81 29.6
AT3G49180 Arabidopsis thaliana HOM05D002332 ORTHO05D002509 7.6e-06 54.7 85 31.8
CARHR158060 Cardamine hirsuta HOM05D002332 ORTHO05D002509 7.6e-06 54.7 83 34.9
Cfa002109 Carpinus fangiana HOM05D000453 ORTHO05D006365 7.6e-06 54.7 72 29.2
FAN21G3625 Fragaria x ananassa HOM05D001335 ORTHO05D001184 7.6e-06 54.7 97 26.8
MCO06G233 Micromonas commoda HOM05D017291 ORTHO05D017328 7.6e-06 54.7 76 39.5
RhsimUnG0145700 Rhododendron simsii HOM05D002288 ORTHO05D017675 7.6e-06 54.7 51 45.1
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 7.6e-06 54.7 55 43.6
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 9.9e-06 54.3 55 45.5
CiPaw.01G234000 Carya illinoinensis HOM05D000453 ORTHO05D006365 9.9e-06 54.3 72 31.9
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 9.9e-06 54.3 87 35.6
Psat7g003840 Pisum sativum HOM05D002288 ORTHO05D002894 9.9e-06 54.3 53 43.4


User provided reference genes

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