Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2688 Fragaria x ananassa HOM05D000104 ORTHO05D004881 1.0e-140 503.4 258 100.0
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 3.0e-129 465.3 246 97.6
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 2.8e-127 458.8 237 98.7
FAN10G4356 Fragaria x ananassa HOM05D012050 ORTHO05D004881 3.7e-127 458.4 237 98.7
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 2.7e-122 442.2 237 95.8
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 6.1e-122 441.0 237 95.8
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.1e-118 428.3 228 96.1
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 1.3e-111 406.8 230 90.9
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 8.6e-84 314.3 225 73.3
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 3.6e-82 308.9 241 68.5
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 2.0e-72 276.6 237 63.7
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 6.9e-65 251.5 228 63.2
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 7.6e-64 248.1 223 63.2
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 6.2e-58 228.4 233 56.2
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 1.4e-57 227.3 229 54.1
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 3.1e-57 226.1 233 55.8
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 4.0e-57 225.7 223 58.7
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 1.5e-56 223.8 229 53.7
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 1.7e-55 220.3 223 57.8
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 2.5e-54 216.5 237 56.5
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 3.2e-54 216.1 228 58.3
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 4.2e-54 215.7 216 56.5
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 1.2e-53 214.2 228 57.9
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 2.7e-53 213.0 232 53.9
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 4.6e-53 212.2 223 52.5
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 1.8e-52 210.3 232 53.9
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 2.3e-52 209.9 212 55.7
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 3.0e-52 209.5 230 52.6
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 3.9e-52 209.1 210 56.7
Psat2g019640 Pisum sativum HOM05D000104 ORTHO05D004881 8.7e-52 208.0 223 52.0
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 8.7e-52 208.0 229 52.4
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 1.1e-51 207.6 245 49.8
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 1.9e-51 206.8 249 51.4
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 5.7e-51 205.3 226 55.3
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 4.8e-50 202.2 231 55.0
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 6.3e-50 201.8 226 54.9
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 2.4e-49 199.9 227 53.7
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 3.1e-49 199.5 232 54.3
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 3.1e-49 199.5 244 50.4
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 3.1e-49 199.5 200 56.5
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.0e-47 194.5 229 52.8
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 1.0e-47 194.5 231 51.1
Hma1.2p1_1427F.1_g282920 Hydrangea macrophylla HOM05D000104 ORTHO05D004881 1.3e-47 194.1 245 48.2
TAR633G1573 Trochodendron aralioides HOM05D000104 ORTHO05D004881 2.2e-47 193.4 232 50.4
Duzib168G0196 Durio zibethinus HOM05D000104 ORTHO05D004881 1.1e-46 191.0 210 53.8
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.4e-46 190.7 230 52.2
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 1.4e-46 190.7 230 52.2
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 3.2e-46 189.5 222 50.0
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 4.2e-46 189.1 228 53.5
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 1.6e-45 187.2 200 53.5
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 4.6e-45 185.7 239 47.7
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 6.1e-45 185.3 248 52.0
Eucgr.J00717 Eucalyptus grandis HOM05D000104 ORTHO05D004881 1.3e-44 184.1 243 49.0
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 1.8e-44 183.7 223 52.5
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 5.1e-44 182.2 225 52.0
Lalb_Chr10g0106391 Lupinus albus HOM05D000104 ORTHO05D004881 1.5e-43 180.6 231 47.6
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 3.3e-43 179.5 231 49.4
Psat5g195120 Pisum sativum HOM05D000104 ORTHO05D004881 2.2e-42 176.8 199 54.8
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 2.8e-42 176.4 245 50.6
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 8.2e-42 174.9 231 46.3
Actinidia06943 Actinidia chinensis HOM05D000104 ORTHO05D004881 1.8e-41 173.7 247 46.2
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 5.3e-41 172.2 230 47.0
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 3.4e-40 169.5 257 43.2
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 3.4e-40 169.5 221 44.3
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 2.5e-38 163.3 231 44.2
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 3.2e-38 162.9 255 43.5
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 4.2e-38 162.5 236 44.1
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 5.5e-38 162.2 229 44.5
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 5.5e-38 162.2 247 45.7
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 3.9e-36 156.0 189 50.3
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 1.1e-35 154.5 234 47.0
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 7.4e-35 151.8 243 42.0
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 1.3e-34 151.0 230 43.5
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 2.8e-34 149.8 253 41.9
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 4.8e-34 149.1 253 42.3
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 2.2e-31 140.2 217 44.2
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 2.9e-31 139.8 217 44.2
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 1.1e-30 137.9 229 41.9
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 1.9e-30 137.1 226 43.8
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 2.5e-30 136.7 144 52.1
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 4.2e-30 136.0 235 41.3
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 5.5e-30 135.6 250 41.6
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 5.5e-30 135.6 250 41.6
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 2.7e-29 133.3 250 40.8
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 1.0e-28 131.3 237 41.4
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 3.9e-28 129.4 248 41.5
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 6.7e-28 128.6 230 40.4
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 8.8e-28 128.3 231 42.4
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 5.7e-27 125.6 252 40.1
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 2.8e-26 123.2 248 40.3
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 6.3e-26 122.1 176 45.5
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 8.2e-26 121.7 230 39.6
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 1.4e-25 120.9 196 40.3
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 3.1e-25 119.8 234 39.7
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 1.2e-24 117.9 224 41.1
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 1.2e-24 117.9 234 35.5
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.7e-24 115.2 174 44.3
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 1.0e-23 114.8 250 36.8
SalBow6G0238 Salvia bowleyana HOM05D000104 ORTHO05D004881 1.8e-20 104.0 254 37.0
SHI27489 Sapria himalayana HOM05D000104 ORTHO05D004881 1.1e-19 101.3 245 37.1
ATR0721G045 Amborella trichopoda HOM05D000104 ORTHO05D004881 1.4e-17 94.4 190 38.4
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 2.7e-16 90.1 235 36.6
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 4.5e-16 89.4 233 32.6
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 2.5e-14 83.6 134 42.5
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 2.7e-13 80.1 185 35.7
Oeu061292.1 Olea europaea HOM05D000104 ORTHO05D004881 2.7e-13 80.1 180 36.7
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 5.7e-11 72.4 262 30.9
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 1.7e-10 70.9 173 33.5
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 2.2e-10 70.5 219 32.0
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 8.3e-10 68.6 164 36.0
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 6.5e-07 58.9 177 37.9
HPP92_006719 Vanilla planifolia HOM05D000104 ORTHO05D004881 3.2e-06 56.6 109 38.5
HPP92_006715 Vanilla planifolia HOM05D000104 ORTHO05D004881 5.5e-06 55.8 121 37.2


User provided reference genes

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