Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 3521.1 1924 100.0
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 3488.4 1924 99.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 3427.1 1928 97.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 3218.7 1928 92.7
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 3206.8 1964 91.0
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2853.9 1901 82.2
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2718.7 1888 79.0
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2689.1 1963 77.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2516.9 1987 71.2
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2497.6 1937 71.7
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2488.4 1956 71.4
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2484.1 1934 71.3
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2468.0 1945 71.1
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2466.8 1914 71.7
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2421.0 1934 70.9
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2414.4 1926 70.9
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2412.1 1914 70.9
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2411.3 1863 70.7
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2403.6 1935 70.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2403.2 1902 71.4
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2399.8 1940 70.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2397.9 1929 70.8
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2383.2 1794 71.3
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2382.8 1934 69.5
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2380.5 1933 69.5
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2370.9 1964 68.8
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2369.0 1941 68.7
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2367.8 1903 70.4
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2357.8 1922 69.0
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2351.2 1940 69.2
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2350.1 1831 69.1
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2334.7 1929 69.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2334.3 1948 68.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2324.7 1771 70.8
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2324.3 1954 68.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2323.9 1921 68.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2323.1 2042 65.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2323.1 1858 70.3
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2312.0 1975 66.8
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2310.4 1825 69.3
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2283.4 1933 67.1
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2277.7 1914 68.0
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2263.4 1927 67.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2260.7 1910 67.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2260.7 1932 65.5
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2249.6 1824 67.1
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2237.6 1897 67.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2231.8 1810 67.4
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2230.3 1927 65.9
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2227.6 1766 72.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2224.5 1890 67.9
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2222.2 1905 66.9
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2221.0 1926 65.7
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2217.6 1932 66.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2205.6 1789 66.5
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2192.9 1948 64.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2192.5 1919 65.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1914 64.7
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2182.1 1918 64.8
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2178.3 1940 64.6
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2175.6 1932 63.9
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2172.1 1921 64.8
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2168.7 1787 66.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2166.7 1868 66.9
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2166.0 1915 65.6
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2159.8 1909 64.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2154.8 1942 64.4
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2141.3 1916 64.8
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2138.6 1809 65.7
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2104.3 1894 64.6
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2091.2 1845 62.4
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2086.6 1906 63.8
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2063.9 1821 62.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2060.8 1783 64.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2042.3 1793 63.3
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2037.7 1923 62.7
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2034.2 1837 61.5
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2023.4 1667 66.8
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2020.0 1908 61.4
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2018.4 1890 61.6
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2017.7 1871 61.4
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2011.5 1807 61.3
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2002.3 1969 60.3
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1949.1 1855 59.6
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1934.1 1894 58.3
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1930.6 1893 59.7
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1928.7 1921 58.6
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1927.9 1917 58.8
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1925.2 1942 59.0
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1916.7 1936 58.4
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1912.9 1937 58.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1902.1 1901 59.7
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1892.5 1837 58.7
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1888.6 1866 58.3
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1887.8 1937 57.9
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1883.6 1830 58.0
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1880.5 1878 57.7
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1875.9 1956 57.5
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1875.5 1959 57.5
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1875.5 1959 57.5
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1870.5 1687 62.3
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1870.1 1955 56.9
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1869.4 1934 56.6
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1848.2 1829 57.5
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1745.7 1860 55.7
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1633.6 1944 51.2
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1589.3 1833 50.8
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1583.2 1238 69.1
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1546.2 1920 51.7
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1524.6 1234 70.1
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1522.7 1939 48.7
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1500.7 1480 60.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1493.4 1434 60.7
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1478.0 1890 48.7
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1478.0 1890 48.7
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1456.8 1865 49.1
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1424.1 1227 66.8
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1404.8 1935 49.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1372.1 1463 56.0
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1268.8 1770 45.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1237.6 1084 66.3
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1181.0 1342 55.6
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1180.6 924 68.8
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1102.4 1036 63.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.8e-296 1023.1 865 65.8
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.5e-284 983.4 1615 41.2
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.1e-283 980.3 1428 46.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 6.1e-283 978.8 841 67.2
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.3e-266 923.7 1792 37.2
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 6.8e-250 869.0 833 57.9
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.4e-247 860.5 815 60.7
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.6e-236 822.8 479 95.2
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-204 717.2 614 67.6
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.1e-194 685.6 654 56.7
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 8.4e-192 676.0 723 53.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.0e-181 642.5 656 53.7
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.0e-181 641.0 501 65.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 5.3e-162 577.0 621 54.3
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 9.4e-159 566.2 450 70.4
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.6e-148 531.6 557 59.1
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-141 509.2 557 57.8
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.2e-116 426.4 403 59.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 1.6e-113 416.0 1239 28.1
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.6e-86 326.2 424 48.1
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.6e-86 326.2 624 36.4
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 8.4e-83 313.9 848 33.4
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.9e-82 312.8 2064 23.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.5e-79 302.4 454 40.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 8.5e-67 260.8 275 69.1
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 9.7e-63 247.3 408 41.7
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.1e-56 224.9 359 45.7
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 5.7e-55 221.5 272 47.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.7e-49 202.6 197 61.9
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.2e-41 177.2 234 54.3
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 4.7e-41 175.3 189 71.4
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.1e-33 149.8 213 47.9
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 6.6e-19 101.7 157 41.4
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 8.6e-19 101.3 63 76.2
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 9.8e-15 87.8 85 56.5
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.3e-14 87.4 68 58.8
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 4.1e-13 82.4 127 72.4
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 1.2e-12 80.9 52 63.5
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.7e-11 77.0 59 66.1
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 4.3e-10 72.4 44 75.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.6e-09 70.5 33 87.9
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 1.2e-07 64.3 42 71.4
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.0e-07 63.5 52 53.8
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 8.3e-06 58.2 39 76.9


User provided reference genes

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