Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.6e-310 1068.5 542 100.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 7.9e-289 996.5 529 96.4
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.1e-277 958.0 544 92.6
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 8.9e-248 860.1 463 96.1
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.4e-213 744.6 527 77.4
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.2e-198 696.0 416 87.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 6.5e-198 694.5 540 69.8
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 3.3e-178 629.0 547 64.5
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 3.0e-163 579.3 552 60.0
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 4.0e-163 578.9 549 59.7
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 2.3e-155 553.1 550 58.4
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.4e-152 543.9 544 58.1
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 2.5e-149 533.1 549 54.5
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 7.2e-149 531.6 578 54.3
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 9.8e-146 521.2 568 53.5
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.2e-145 520.0 553 54.6
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 4.9e-145 518.8 543 56.5
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.6e-140 503.8 545 54.3
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.1e-140 503.4 547 54.8
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.8e-139 500.4 508 56.9
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 5.2e-139 498.8 553 53.0
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.5e-138 497.3 551 54.8
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 2.0e-138 496.9 516 56.2
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 6.4e-137 491.9 562 53.0
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 4.6e-135 485.7 651 48.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 5.9e-135 485.3 552 53.6
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 8.6e-134 481.5 617 49.8
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.5e-133 479.9 609 49.4
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 4.7e-132 475.7 544 53.3
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 1.8e-131 473.8 574 51.7
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.1e-131 473.0 477 54.5
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 6.8e-131 471.9 545 52.5
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 2.0e-130 470.3 561 53.3
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 4.4e-130 469.2 554 54.5
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 3.9e-126 456.1 516 54.1
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.1e-125 454.5 597 49.7
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.5e-125 454.1 635 48.3
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 2.5e-125 453.4 550 51.1
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 1.2e-124 451.1 560 51.8
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.6e-124 450.7 560 51.8
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.8e-124 449.9 402 61.7
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 6.2e-124 448.7 553 49.4
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 2.6e-122 443.4 549 52.1
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 2.1e-119 433.7 654 45.3
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 7.8e-119 431.8 609 47.1
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.3e-118 431.0 654 44.8
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.9e-117 427.2 544 50.7
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 3.3e-117 426.4 513 49.7
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 6.2e-116 422.2 586 46.2
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.5e-114 417.5 542 48.7
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.6e-114 416.8 599 47.1
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 4.4e-114 416.0 611 45.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 5.8e-114 415.6 294 69.4
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.3e-113 414.5 600 44.7
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.7e-113 414.1 317 65.3
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 1.7e-113 414.1 605 45.1
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 8.4e-113 411.8 611 46.2
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.4e-112 411.0 631 43.3
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.9e-112 410.6 566 46.8
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 9.2e-112 408.3 603 46.3
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 9.2e-112 408.3 539 48.4
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 1.2e-111 407.9 383 59.8
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.7e-110 404.1 551 46.6
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.7e-110 404.1 551 46.6
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 8.6e-110 401.7 625 44.5
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.5e-109 401.0 464 50.9
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.5e-109 400.2 551 46.3
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 5.6e-109 399.1 329 64.7
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.6e-108 397.5 504 47.6
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.6e-108 397.5 519 48.0
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 2.8e-108 396.7 545 46.6
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 4.7e-108 396.0 535 47.9
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 1.1e-107 394.8 570 45.8
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 5.2e-107 392.5 535 47.3
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.4e-106 389.8 600 44.5
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 5.8e-106 389.0 283 65.7
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 8.4e-105 385.2 733 39.3
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.4e-104 383.6 547 45.0
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.4e-104 383.6 553 45.6
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 9.3e-104 381.7 575 43.3
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.6e-103 380.9 549 45.7
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.1e-103 380.6 298 67.1
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 5.6e-101 372.5 328 60.4
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.6e-100 370.9 555 44.5
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 2.1e-100 370.5 560 43.8
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.1e-99 368.2 538 44.6
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.8e-99 367.5 676 38.5
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 4.0e-99 366.3 456 48.5
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.8e-97 359.8 502 45.2
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.1e-96 358.2 655 38.3
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 4.2e-96 356.3 530 42.8
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 6.0e-95 352.4 645 39.4
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 1.0e-94 351.7 373 53.4
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 3.3e-93 346.7 455 47.0
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.4e-91 341.3 249 67.5
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 3.1e-91 340.1 548 43.2
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.2e-90 338.2 442 46.8
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.2e-90 338.2 442 46.8
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.3e-89 334.7 340 52.9
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.9e-89 333.6 530 41.3
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.1e-88 331.6 326 53.1
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 3.0e-86 323.6 455 45.3
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 3.9e-86 323.2 442 47.5
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 5.1e-86 322.8 397 47.6
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.9e-85 320.9 455 45.1
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.0e-82 310.8 546 40.3
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.2e-80 303.5 339 50.4
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.6e-76 291.2 622 37.0
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 5.9e-74 282.7 383 44.4
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.8e-70 271.2 398 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 2.1e-63 247.7 314 41.4
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.4e-62 245.0 319 41.1
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 6.7e-62 242.7 445 38.9
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.3e-60 236.1 284 50.7
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.5e-57 226.1 323 48.9
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 9.4e-56 222.2 316 39.2
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 6.1e-55 219.5 282 43.6
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.8e-54 218.0 556 33.5
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.5e-53 214.9 275 49.1
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.5e-40 171.8 367 33.5
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.2e-39 168.7 100 83.0
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 7.7e-34 149.4 291 34.4
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.9e-32 144.8 111 71.2
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 4.1e-19 100.5 83 61.4
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.0e-17 95.9 75 56.0
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 8.0e-15 86.3 171 42.7
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 8.9e-14 82.8 66 48.5
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 3.4e-13 80.9 53 73.6
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 3.7e-12 77.4 74 52.7
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 1.6e-10 72.0 45 75.6
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 7.8e-10 69.7 358 27.7


User provided reference genes

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