Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-231 806.2 401 100.0
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.3e-231 804.3 401 99.8
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.6e-230 802.4 401 99.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.8e-230 801.6 402 99.8
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.1e-229 799.7 402 99.5
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 7.1e-218 760.4 401 95.5
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 6.6e-208 727.2 396 92.4
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 8.1e-206 720.3 405 90.1
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 2.6e-204 715.3 406 88.7
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 2.2e-203 712.2 405 88.6
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 2.9e-203 711.8 405 88.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 6.4e-203 710.7 407 88.5
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.1e-202 709.9 403 88.6
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.1e-202 709.9 407 88.0
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.4e-202 709.5 403 88.8
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 5.5e-202 707.6 409 88.5
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 5.5e-202 707.6 408 86.8
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.7e-201 705.3 405 88.1
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.7e-201 705.3 404 87.9
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.5e-201 704.9 405 88.4
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 4.6e-201 704.5 405 88.1
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 7.9e-201 703.7 411 87.6
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.3e-200 702.2 404 87.4
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 3.0e-200 701.8 408 87.5
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.0e-200 701.8 406 86.7
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 3.0e-200 701.8 403 87.3
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.1e-200 701.0 407 87.5
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 8.7e-200 700.3 404 87.1
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.9e-199 699.1 401 88.0
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 2.5e-199 698.7 419 85.0
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.5e-199 698.7 407 87.2
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 3.3e-199 698.4 401 87.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 3.3e-199 698.4 404 86.9
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 4.3e-199 698.0 401 88.0
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.3e-198 696.4 401 87.8
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.6e-198 696.0 407 86.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 2.8e-198 695.3 405 86.9
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.8e-198 695.3 406 87.2
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 8.1e-198 693.7 401 85.8
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 4.0e-197 691.4 405 86.7
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 5.3e-197 691.0 414 84.3
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 6.9e-197 690.6 402 86.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 9.0e-197 690.3 403 85.4
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 9.0e-197 690.3 406 86.2
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.5e-196 689.5 402 86.1
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.5e-196 689.5 402 85.6
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.6e-196 688.7 407 85.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.4e-196 688.3 405 84.7
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 4.5e-196 688.0 364 92.6
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.0e-195 686.8 401 86.3
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 1.0e-195 686.8 404 86.6
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.0e-195 686.8 407 85.5
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.7e-195 686.0 357 94.4
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 1.7e-195 686.0 402 86.6
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.2e-195 685.6 357 94.1
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.9e-195 685.3 355 94.6
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.9e-195 685.3 355 94.6
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.8e-195 684.9 403 85.1
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 6.5e-195 684.1 405 85.2
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 6.5e-195 684.1 405 85.2
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.1e-194 683.3 409 84.4
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.1e-194 683.3 406 83.5
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 1.1e-194 683.3 409 84.4
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 1.4e-194 682.9 416 83.7
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.4e-194 682.9 405 85.9
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.9e-194 682.6 405 84.9
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.5e-194 682.2 406 84.2
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 3.2e-194 681.8 403 84.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 4.2e-194 681.4 372 90.1
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 7.1e-194 680.6 406 84.0
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 9.3e-194 680.2 404 84.9
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 2.7e-193 678.7 406 83.5
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 6.0e-193 677.6 406 84.7
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 6.0e-193 677.6 409 82.9
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 7.9e-193 677.2 409 83.1
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 7.9e-193 677.2 409 83.1
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.0e-192 676.8 409 83.6
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.0e-192 676.8 407 83.0
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.3e-192 676.4 409 83.4
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.3e-192 676.4 409 83.4
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.8e-192 676.0 409 83.1
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.3e-192 675.6 403 83.9
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.3e-192 675.6 411 84.7
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.3e-192 675.6 404 84.4
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 3.0e-192 675.2 409 82.9
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 3.9e-192 674.9 409 83.4
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 5.1e-192 674.5 409 82.9
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 6.7e-192 674.1 415 82.4
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.9e-191 672.5 403 83.4
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.3e-191 671.4 401 83.3
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 4.3e-191 671.4 406 84.2
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 9.6e-191 670.2 425 81.6
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.3e-190 669.8 409 82.6
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-190 669.8 383 87.2
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 2.8e-190 668.7 371 88.4
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.7e-190 668.3 400 84.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 4.8e-190 667.9 365 90.1
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 8.2e-190 667.2 406 82.8
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.8e-189 666.0 425 81.9
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 4.1e-189 664.8 373 87.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 4.1e-189 664.8 396 84.6
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-188 663.3 413 81.8
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 3.4e-188 661.8 401 83.0
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 1.0e-187 660.2 404 81.2
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 5.0e-187 657.9 381 85.6
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 5.5e-186 654.4 411 81.3
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 1.1e-178 630.2 333 91.6
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 5.1e-176 621.3 365 83.0
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 4.3e-175 618.2 368 81.8
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 4.8e-174 614.8 367 81.5
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 6.3e-174 614.4 368 83.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.4e-173 613.2 376 78.5
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.1e-170 603.6 408 77.9
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.4e-170 600.5 403 77.2
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 2.3e-160 569.3 397 74.3
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 8.2e-158 560.8 334 83.5
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.0e-151 539.7 320 85.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 3.4e-151 538.9 335 82.1
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.4e-149 532.7 353 72.2
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.7e-148 529.3 313 84.7
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 5.2e-144 515.0 353 69.1
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 3.1e-141 505.8 288 84.7
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 7.0e-141 504.6 402 67.9
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.6e-140 503.4 304 82.9
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 6.6e-139 498.0 345 70.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 5.7e-135 485.0 406 63.1
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 9.8e-135 484.2 299 82.9
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 7.8e-132 474.6 287 85.0
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.8e-129 466.1 344 66.0
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.8e-129 466.1 248 91.1
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 4.0e-120 435.6 305 73.4
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.7e-115 420.2 276 77.2
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 5.8e-103 378.6 251 73.3
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 9.0e-96 354.8 316 61.4
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.6e-58 230.3 132 84.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.3e-58 229.9 132 83.3
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 5.0e-54 216.1 360 38.3
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.8e-49 200.3 118 82.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.7e-49 199.9 118 81.4
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.2e-43 179.5 104 84.6
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-42 177.2 103 84.5
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.6e-42 177.2 103 84.5
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.5e-37 161.4 101 80.2
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-36 158.3 94 81.9
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 9.8e-34 148.7 94 77.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 3.0e-27 127.1 105 66.7
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 5.2e-27 126.3 98 71.4
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 7.5e-26 122.5 148 50.7
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.2e-24 115.5 71 73.2
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 2.3e-22 110.9 62 91.9
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 5.0e-22 109.8 59 86.4
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-20 105.1 81 67.9
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 3.0e-19 100.5 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 2.0e-18 97.8 59 81.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.3e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 5.4e-08 63.2 75 54.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.6e-07 60.1 53 60.4


User provided reference genes

Program Settings