Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.9e-243 844.3 416 100.0
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 3.0e-227 791.6 416 94.2
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.0e-227 791.6 427 92.3
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 7.6e-215 750.4 405 93.1
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 4.0e-208 728.0 416 87.0
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 3.9e-179 631.7 417 76.3
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 2.0e-167 592.8 417 74.1
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 4.9e-145 518.5 422 63.7
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 4.1e-144 515.4 456 58.3
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 6.6e-142 508.1 421 62.2
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 1.1e-141 507.3 413 63.2
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 2.1e-140 503.1 426 62.7
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 1.0e-139 500.7 424 63.4
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 1.4e-139 500.4 427 61.6
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 1.3e-137 493.8 428 60.5
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.7e-137 493.4 419 62.3
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 4.9e-137 491.9 420 61.2
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 3.2e-136 489.2 421 61.0
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 1.2e-135 487.3 418 62.7
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 1.3e-134 483.8 430 60.2
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 1.3e-134 483.8 427 59.3
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 1.7e-134 483.4 417 60.0
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 3.0e-134 482.6 428 61.2
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 6.6e-134 481.5 426 60.6
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 6.6e-134 481.5 465 56.6
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 3.3e-133 479.2 425 59.1
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 5.6e-133 478.4 424 61.1
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 5.6e-133 478.4 424 61.1
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 5.6e-133 478.4 425 60.9
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 7.3e-133 478.0 418 59.3
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 1.6e-132 476.9 414 61.1
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 6.2e-132 474.9 460 55.9
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 2.3e-131 473.0 434 57.8
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 4.0e-131 472.2 458 56.3
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 1.2e-130 470.7 425 59.3
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 1.2e-130 470.7 426 59.6
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 1.5e-130 470.3 422 58.3
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 2.0e-130 469.9 424 59.4
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 2.6e-130 469.5 425 57.9
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 1.2e-127 460.7 412 60.0
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 4.6e-127 458.8 452 56.6
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 6.0e-127 458.4 420 59.3
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 6.6e-126 454.9 413 58.6
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 8.6e-126 454.5 429 56.9
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 8.6e-126 454.5 385 61.8
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 1.1e-125 454.1 420 58.6
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 1.5e-125 453.8 453 55.8
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 1.5e-125 453.8 423 57.2
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 1.9e-125 453.4 424 55.7
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 3.3e-125 452.6 430 56.7
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 3.3e-125 452.6 431 56.1
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 5.6e-125 451.8 418 57.2
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 9.5e-125 451.1 431 55.7
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 1.2e-124 450.7 427 55.3
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.2e-124 450.7 438 54.8
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.6e-124 450.3 417 57.3
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 2.1e-124 449.9 433 54.5
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 2.8e-124 449.5 404 60.1
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 2.8e-124 449.5 427 56.2
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 4.7e-124 448.7 414 58.2
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 2.3e-123 446.4 430 55.6
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 3.1e-123 446.0 429 55.7
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 3.1e-123 446.0 416 57.9
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 4.0e-123 445.7 431 56.8
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 8.9e-123 444.5 429 55.5
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 1.5e-122 443.7 419 57.5
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 3.4e-122 442.6 394 60.9
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 4.4e-122 442.2 434 54.1
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 7.6e-122 441.4 407 59.0
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 9.9e-122 441.0 427 56.9
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 1.4e-120 437.2 431 56.6
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 1.4e-120 437.2 342 66.4
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 5.6e-117 425.2 459 52.9
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 2.1e-116 423.3 416 57.2
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 2.8e-116 422.9 457 53.6
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 5.8e-114 415.2 427 54.1
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 3.5e-111 406.0 472 51.7
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 2.3e-110 403.3 434 53.0
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 4.3e-109 399.1 404 53.5
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 7.3e-109 398.3 350 61.7
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 1.3e-108 397.5 366 58.2
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 5.4e-104 382.1 373 55.2
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 8.4e-97 358.2 416 48.3
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 2.1e-92 343.6 331 56.2
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 3.1e-91 339.7 383 50.1
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.5e-90 337.4 307 59.3
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 7.9e-87 325.1 314 56.4
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 1.3e-81 307.8 316 53.5
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 2.7e-79 300.1 250 63.2
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 1.6e-71 274.2 311 49.5
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 1.8e-70 270.8 339 46.3
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-62 242.3 500 35.8
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.8e-59 234.2 246 53.3
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 2.4e-59 233.8 326 44.5
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 1.1e-56 224.9 203 61.6
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 3.7e-52 209.9 213 53.1
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 9.1e-51 205.3 373 37.3
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 2.0e-50 204.1 202 53.0
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.0e-50 204.1 140 79.3
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 5.2e-46 189.5 166 54.2
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 8.8e-46 188.7 159 63.5
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 5.7e-45 186.0 166 53.6
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 2.2e-44 184.1 293 44.0
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 9.1e-43 178.7 167 55.1
Solyc07g017250.4 Solanum lycopersicum HOM05D006401 ORTHO05D007864 1.6e-39 167.9 168 53.0
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 6.1e-39 166.0 131 64.9
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 4.4e-37 159.8 324 39.8
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 1.2e-29 135.2 86 76.7
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 2.9e-28 130.6 75 84.0
Lju50A23T28 Lonicera japonica HOM05D006401 ORTHO05D007864 3.7e-28 130.2 82 72.0
Oeu021025.1 Olea europaea HOM05D006401 ORTHO05D007864 4.9e-28 129.8 87 69.0
MCO14G313 Micromonas commoda HOM05D006401 ORTHO05D007864 1.1e-27 128.6 477 27.9
SEGI_09852 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 3.2e-27 127.1 146 52.7
SEGI_04184 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.7e-20 104.8 71 70.4
Aa31sc608G30 Aethionema arabicum HOM05D006401 ORTHO05D007864 9.2e-19 99.0 73 69.9
Cre01.g021900 Chlamydomonas reinhardtii HOM05D006401 ORTHO05D007864 4.0e-14 83.6 555 23.8
Nn8g41111 Nelumbo nucifera HOM05D006401 ORTHO05D007864 5.2e-14 83.2 56 64.3
Oeu021024.1 Olea europaea HOM05D006401 ORTHO05D007864 4.1e-11 73.6 56 58.9
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 1.3e-09 68.6 371 26.4
SEGI_39788 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.1e-09 66.6 48 68.8
MELO3C009013.2 Cucumis melo HOM05D006401 ORTHO05D007864 7.3e-08 62.8 44 68.2
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 7.3e-08 62.8 323 26.0
RcHm_v2.0_Chr2g0147481 Rosa chinensis HOM05D006401 ORTHO05D007864 1.2e-07 62.0 36 69.4
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 1.1e-06 58.9 164 30.5
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 1.4e-06 58.5 128 32.0
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.8e-06 58.2 138 34.8
SEGI_17053 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 2.4e-06 57.8 52 42.3
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 4.0e-06 57.0 349 25.5
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 5.2e-06 56.6 128 28.9
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 6.8e-06 56.2 128 29.7
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 6.8e-06 56.2 338 24.9
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 8.9e-06 55.8 129 33.3
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 8.9e-06 55.8 167 28.7


User provided reference genes

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